Results 21 - 40 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 183647 | 0.69 | 0.621101 |
Target: 5'- -gGCUCCCuaccaauauggcugaCCCcCUCAUGCGCACAGGg -3' miRNA: 3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 164680 | 0.71 | 0.549331 |
Target: 5'- gCGCUcaacCCCCCCGaCUCGCGCcgcuGCACAGa -3' miRNA: 3'- gGUGA----GGGGGGC-GGGUGCG----UGUGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 51405 | 0.75 | 0.321955 |
Target: 5'- cCCGCgcaUCCCCauggugaaccugCUGCCCGCGCGCuACAGGg -3' miRNA: 3'- -GGUG---AGGGG------------GGCGGGUGCGUG-UGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 117814 | 0.75 | 0.321255 |
Target: 5'- aCC-CUCCCCCuCGCCCcucgcccucaggcACGCGgGCAGGc -3' miRNA: 3'- -GGuGAGGGGG-GCGGG-------------UGCGUgUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 111491 | 0.77 | 0.261668 |
Target: 5'- gCCACccccgggcuggugaUCCCCgCCG-CCGCGCGCACGGGg -3' miRNA: 3'- -GGUG--------------AGGGG-GGCgGGUGCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 129124 | 0.77 | 0.257523 |
Target: 5'- aCACUCCCCCgCGCCCGgggccgaGgACACGGGg -3' miRNA: 3'- gGUGAGGGGG-GCGGGUg------CgUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 136442 | 0.77 | 0.234861 |
Target: 5'- gCAgUCCuCCUCGCCCACGCgcaggcccucGCACAGGg -3' miRNA: 3'- gGUgAGG-GGGGCGGGUGCG----------UGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 58508 | 0.78 | 0.224171 |
Target: 5'- gCCcCUCCUCUgGCCCAUGgCACACAGGg -3' miRNA: 3'- -GGuGAGGGGGgCGGGUGC-GUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 155809 | 0.8 | 0.152797 |
Target: 5'- aCCugUagagggucagCUCCCCGCCCGCGCACGCGu- -3' miRNA: 3'- -GGugA----------GGGGGGCGGGUGCGUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 167142 | 1.09 | 0.001797 |
Target: 5'- gCCACUCCCCCCGCCCACGCACACAAGc -3' miRNA: 3'- -GGUGAGGGGGGCGGGUGCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 145699 | 0.74 | 0.381662 |
Target: 5'- -aGCUCCCCgCCGCCacguagaaCugGCACAgGAGg -3' miRNA: 3'- ggUGAGGGG-GGCGG--------GugCGUGUgUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 14005 | 0.73 | 0.431037 |
Target: 5'- cCCACcugCCCgCCCGCCCGCccaccugacccGCGCAgAGGu -3' miRNA: 3'- -GGUGa--GGG-GGGCGGGUG-----------CGUGUgUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 178820 | 0.71 | 0.530324 |
Target: 5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3' miRNA: 3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 30479 | 0.71 | 0.530324 |
Target: 5'- cUCGC-CCaUCCCGCCCGCGgACGCGu- -3' miRNA: 3'- -GGUGaGG-GGGGCGGGUGCgUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 12113 | 0.71 | 0.530324 |
Target: 5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3' miRNA: 3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 118754 | 0.71 | 0.52091 |
Target: 5'- aCCGCcCCCCgCCGCCCcccuccucgguGCGCAgCACGuAGg -3' miRNA: 3'- -GGUGaGGGG-GGCGGG-----------UGCGU-GUGU-UC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 68270 | 0.71 | 0.52091 |
Target: 5'- gUCGCUCCUCCC-CCgGCGCAC-CAGc -3' miRNA: 3'- -GGUGAGGGGGGcGGgUGCGUGuGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 129252 | 0.71 | 0.502285 |
Target: 5'- cCCACUCCCugguggCCCGCuCCGC-CGC-CAAGg -3' miRNA: 3'- -GGUGAGGG------GGGCG-GGUGcGUGuGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 57398 | 0.72 | 0.448308 |
Target: 5'- gCgGCUCCCCCacccccugcgGCCCGgGCGCGCAc- -3' miRNA: 3'- -GgUGAGGGGGg---------CGGGUgCGUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 180712 | 0.73 | 0.431037 |
Target: 5'- cCCACcugCCCgCCCGCCCGCccaccugacccGCGCAgAGGu -3' miRNA: 3'- -GGUGa--GGG-GGGCGGGUG-----------CGUGUgUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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