miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 129124 0.77 0.257523
Target:  5'- aCACUCCCCCgCGCCCGgggccgaGgACACGGGg -3'
miRNA:   3'- gGUGAGGGGG-GCGGGUg------CgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 136442 0.77 0.234861
Target:  5'- gCAgUCCuCCUCGCCCACGCgcaggcccucGCACAGGg -3'
miRNA:   3'- gGUgAGG-GGGGCGGGUGCG----------UGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 58508 0.78 0.224171
Target:  5'- gCCcCUCCUCUgGCCCAUGgCACACAGGg -3'
miRNA:   3'- -GGuGAGGGGGgCGGGUGC-GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 155809 0.8 0.152797
Target:  5'- aCCugUagagggucagCUCCCCGCCCGCGCACGCGu- -3'
miRNA:   3'- -GGugA----------GGGGGGCGGGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 167142 1.09 0.001797
Target:  5'- gCCACUCCCCCCGCCCACGCACACAAGc -3'
miRNA:   3'- -GGUGAGGGGGGCGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 68270 0.71 0.52091
Target:  5'- gUCGCUCCUCCC-CCgGCGCAC-CAGc -3'
miRNA:   3'- -GGUGAGGGGGGcGGgUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 118754 0.71 0.52091
Target:  5'- aCCGCcCCCCgCCGCCCcccuccucgguGCGCAgCACGuAGg -3'
miRNA:   3'- -GGUGaGGGG-GGCGGG-----------UGCGU-GUGU-UC- -5'
4040 3' -59.8 NC_001650.1 + 70404 0.68 0.685514
Target:  5'- gCACUCCUCCCaggagacgGCCCugGaCGuCACAGa -3'
miRNA:   3'- gGUGAGGGGGG--------CGGGugC-GU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 67164 0.69 0.666082
Target:  5'- ---aUCUCCCCGCCCGCGU-C-CGAGa -3'
miRNA:   3'- ggugAGGGGGGCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 183511 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 16804 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 140204 0.69 0.656324
Target:  5'- gCCGCUUCCCCCaGCCgUAUGCACc---- -3'
miRNA:   3'- -GGUGAGGGGGG-CGG-GUGCGUGuguuc -5'
4040 3' -59.8 NC_001650.1 + 82298 0.69 0.636763
Target:  5'- cCCGCUCgccccacccgCCCCCGUUCGCcCACuACGAGg -3'
miRNA:   3'- -GGUGAG----------GGGGGCGGGUGcGUG-UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 16941 0.69 0.630889
Target:  5'- -gGCUCCCuaccaauauggcugaCCC-CUCAUGCGCACAGGg -3'
miRNA:   3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 109167 0.69 0.626974
Target:  5'- gCCug-CCCCCgGCCCGagugggacgagcCGUACGCGGGg -3'
miRNA:   3'- -GGugaGGGGGgCGGGU------------GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 183647 0.69 0.621101
Target:  5'- -gGCUCCCuaccaauauggcugaCCCcCUCAUGCGCACAGGg -3'
miRNA:   3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 164680 0.71 0.549331
Target:  5'- gCGCUcaacCCCCCCGaCUCGCGCcgcuGCACAGa -3'
miRNA:   3'- gGUGA----GGGGGGC-GGGUGCG----UGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 178820 0.71 0.530324
Target:  5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3'
miRNA:   3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 30479 0.71 0.530324
Target:  5'- cUCGC-CCaUCCCGCCCGCGgACGCGu- -3'
miRNA:   3'- -GGUGaGG-GGGGCGGGUGCgUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 12113 0.71 0.530324
Target:  5'- cCCAC-CCCaaaCCC-CCCugGCACACAc- -3'
miRNA:   3'- -GGUGaGGG---GGGcGGGugCGUGUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.