miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 164680 0.71 0.549331
Target:  5'- gCGCUcaacCCCCCCGaCUCGCGCcgcuGCACAGa -3'
miRNA:   3'- gGUGA----GGGGGGC-GGGUGCG----UGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 183647 0.69 0.621101
Target:  5'- -gGCUCCCuaccaauauggcugaCCCcCUCAUGCGCACAGGg -3'
miRNA:   3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 170355 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 120726 0.68 0.689383
Target:  5'- uUCACgCCCCCCGCCUcccuggugacccucaGgGCAUAgAGGa -3'
miRNA:   3'- -GGUGaGGGGGGCGGG---------------UgCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 17487 0.68 0.695173
Target:  5'- gCCACgCCCCCUccauuuucucagGCCCaaaugucgACGgGCGCGAGg -3'
miRNA:   3'- -GGUGaGGGGGG------------CGGG--------UGCgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 184194 0.68 0.695173
Target:  5'- gCCACgCCCCCUccauuuucucagGCCCaaaugucgACGgGCGCGAGg -3'
miRNA:   3'- -GGUGaGGGGGG------------CGGG--------UGCgUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 121293 0.68 0.695173
Target:  5'- gCCAcCUgUCCCCGCCCgagauagaggGCGUGCGCGc- -3'
miRNA:   3'- -GGU-GAgGGGGGCGGG----------UGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 37905 0.68 0.695173
Target:  5'- gCCGaggaCCCCGCCUACGCGCcCAGc -3'
miRNA:   3'- -GGUgaggGGGGCGGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 157262 0.68 0.695173
Target:  5'- gCCGC-CCCCUCggggcuguaGCCCAUGCGcCugGGGg -3'
miRNA:   3'- -GGUGaGGGGGG---------CGGGUGCGU-GugUUC- -5'
4040 3' -59.8 NC_001650.1 + 166196 0.68 0.695173
Target:  5'- cCCACcCCaCCCCGCgCCAC-CAcCACAGa -3'
miRNA:   3'- -GGUGaGG-GGGGCG-GGUGcGU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 95501 0.68 0.685514
Target:  5'- -gGCUCCCCCUcCCCGgCGCcCGCAc- -3'
miRNA:   3'- ggUGAGGGGGGcGGGU-GCGuGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 3648 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 109167 0.69 0.626974
Target:  5'- gCCug-CCCCCgGCCCGagugggacgagcCGUACGCGGGg -3'
miRNA:   3'- -GGugaGGGGGgCGGGU------------GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 16941 0.69 0.630889
Target:  5'- -gGCUCCCuaccaauauggcugaCCC-CUCAUGCGCACAGGg -3'
miRNA:   3'- ggUGAGGG---------------GGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 82298 0.69 0.636763
Target:  5'- cCCGCUCgccccacccgCCCCCGUUCGCcCACuACGAGg -3'
miRNA:   3'- -GGUGAG----------GGGGGCGGGUGcGUG-UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 140204 0.69 0.656324
Target:  5'- gCCGCUUCCCCCaGCCgUAUGCACc---- -3'
miRNA:   3'- -GGUGAGGGGGG-CGG-GUGCGUGuguuc -5'
4040 3' -59.8 NC_001650.1 + 16804 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 183511 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 67164 0.69 0.666082
Target:  5'- ---aUCUCCCCGCCCGCGU-C-CGAGa -3'
miRNA:   3'- ggugAGGGGGGCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 70404 0.68 0.685514
Target:  5'- gCACUCCUCCCaggagacgGCCCugGaCGuCACAGa -3'
miRNA:   3'- gGUGAGGGGGG--------CGGGugC-GU-GUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.