Results 121 - 140 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4040 | 3' | -59.8 | NC_001650.1 | + | 75722 | 0.74 | 0.353903 |
Target: 5'- aCCcCUCCaCCCCGuccagguagagggacCCCACGCGCACGu- -3' miRNA: 3'- -GGuGAGG-GGGGC---------------GGGUGCGUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 157272 | 0.75 | 0.336204 |
Target: 5'- gCACUCCCCCaCGCgCACGCuCugGAu -3' miRNA: 3'- gGUGAGGGGG-GCGgGUGCGuGugUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 133227 | 0.76 | 0.287684 |
Target: 5'- cCCGCgcccccgUCCCCCCGCagcuCGCACACGGGc -3' miRNA: 3'- -GGUG-------AGGGGGGCGggu-GCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 69095 | 0.76 | 0.26951 |
Target: 5'- cUCAcCUCCugguCCCCGCCCGCGCACgACAu- -3' miRNA: 3'- -GGU-GAGG----GGGGCGGGUGCGUG-UGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 126473 | 0.77 | 0.257523 |
Target: 5'- gCUACUCCCCCguCGCCCACcC-CGCGAGg -3' miRNA: 3'- -GGUGAGGGGG--GCGGGUGcGuGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 81828 | 0.71 | 0.502285 |
Target: 5'- cCCGCUCCCCCCuGCUgcUGCAgCACGGa -3' miRNA: 3'- -GGUGAGGGGGG-CGGguGCGU-GUGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 19231 | 0.71 | 0.502285 |
Target: 5'- aCAUgcagCCCCUCGUUCAC-CACACAGGg -3' miRNA: 3'- gGUGa---GGGGGGCGGGUGcGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 55960 | 0.7 | 0.607413 |
Target: 5'- cCCAC-CCCCUCgggcacggGCCCGuagGCGCGCAGGg -3' miRNA: 3'- -GGUGaGGGGGG--------CGGGUg--CGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 117557 | 0.7 | 0.591811 |
Target: 5'- -uGCUCCCCCgggacggcagcaucaCGCCCAgGCACAa--- -3' miRNA: 3'- ggUGAGGGGG---------------GCGGGUgCGUGUguuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 147552 | 0.7 | 0.578214 |
Target: 5'- gCC-CUCCCgCCCGgCCACguccaGCAgGCAGGa -3' miRNA: 3'- -GGuGAGGG-GGGCgGGUG-----CGUgUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 117344 | 0.7 | 0.578214 |
Target: 5'- cCgGCUCgCCCCCGCCCccgGCGCcuccCGCGGc -3' miRNA: 3'- -GgUGAG-GGGGGCGGG---UGCGu---GUGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 105111 | 0.7 | 0.578214 |
Target: 5'- gCC-CUCCUCCCGCCCGCcgagcggccGCGCcCGGa -3' miRNA: 3'- -GGuGAGGGGGGCGGGUG---------CGUGuGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 136134 | 0.7 | 0.568543 |
Target: 5'- aCCGC-CCUgcaCCUGUCCACGCACAUg-- -3' miRNA: 3'- -GGUGaGGG---GGGCGGGUGCGUGUGuuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 68362 | 0.7 | 0.568543 |
Target: 5'- gCACUCagCCaCCGCCCAacugcccucuggUGUACACAGGa -3' miRNA: 3'- gGUGAGg-GG-GGCGGGU------------GCGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 57750 | 0.7 | 0.558914 |
Target: 5'- uCgACggaCCCCCGuccCCCACGCGCGCGc- -3' miRNA: 3'- -GgUGag-GGGGGC---GGGUGCGUGUGUuc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 117473 | 0.71 | 0.549331 |
Target: 5'- cCCACUCCCCCaagauagGCUCcugcgGCGC-CGCGAGc -3' miRNA: 3'- -GGUGAGGGGGg------CGGG-----UGCGuGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 103704 | 0.71 | 0.52091 |
Target: 5'- -gGC-CUCCCCGuCCCAC-CACACGAGc -3' miRNA: 3'- ggUGaGGGGGGC-GGGUGcGUGUGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 128104 | 0.71 | 0.52091 |
Target: 5'- aCCACcaaaCCCCaucguCGCCCACGCGCcCAAc -3' miRNA: 3'- -GGUGa---GGGGg----GCGGGUGCGUGuGUUc -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 123454 | 0.71 | 0.511563 |
Target: 5'- cCCGCg-CCCCUGCCCA-GCACcuACGGGg -3' miRNA: 3'- -GGUGagGGGGGCGGGUgCGUG--UGUUC- -5' |
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4040 | 3' | -59.8 | NC_001650.1 | + | 161505 | 0.71 | 0.502285 |
Target: 5'- aCCGC-CCUCCCGCCCGC-CACGu--- -3' miRNA: 3'- -GGUGaGGGGGGCGGGUGcGUGUguuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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