miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 114988 0.85 0.079661
Target:  5'- uCUACUCgCCCCCggccuccagcGCCCGCGCGCACGAGu -3'
miRNA:   3'- -GGUGAG-GGGGG----------CGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 123454 0.71 0.511563
Target:  5'- cCCGCg-CCCCUGCCCA-GCACcuACGGGg -3'
miRNA:   3'- -GGUGagGGGGGCGGGUgCGUG--UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 103704 0.71 0.52091
Target:  5'- -gGC-CUCCCCGuCCCAC-CACACGAGc -3'
miRNA:   3'- ggUGaGGGGGGC-GGGUGcGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 29730 0.66 0.830606
Target:  5'- uCUGCUCCCCCUucaggugccugaugGCCCugGUcaaugacuuccucucGgACAAGg -3'
miRNA:   3'- -GGUGAGGGGGG--------------CGGGugCG---------------UgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 157272 0.75 0.336204
Target:  5'- gCACUCCCCCaCGCgCACGCuCugGAu -3'
miRNA:   3'- gGUGAGGGGG-GCGgGUGCGuGugUUc -5'
4040 3' -59.8 NC_001650.1 + 75722 0.74 0.353903
Target:  5'- aCCcCUCCaCCCCGuccagguagagggacCCCACGCGCACGu- -3'
miRNA:   3'- -GGuGAGG-GGGGC---------------GGGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 160476 0.74 0.373807
Target:  5'- uCCGC-CCCCCgCGCgCCGCGaggaCGCGCAGGa -3'
miRNA:   3'- -GGUGaGGGGG-GCG-GGUGC----GUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 122912 0.74 0.389626
Target:  5'- aCCugUCCCagcuCCagauaGCCCACGCcCACGGGg -3'
miRNA:   3'- -GGugAGGG----GGg----CGGGUGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 148410 0.72 0.457086
Target:  5'- gCCGCgCCCCCCuggcgcgggacgGCCgC-CGCGCACGAGu -3'
miRNA:   3'- -GGUGaGGGGGG------------CGG-GuGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 161505 0.71 0.502285
Target:  5'- aCCGC-CCUCCCGCCCGC-CACGu--- -3'
miRNA:   3'- -GGUGaGGGGGGCGGGUGcGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 67112 0.72 0.483957
Target:  5'- -aGCUgCCCCCGcCCCugGC-CGCGAa -3'
miRNA:   3'- ggUGAgGGGGGC-GGGugCGuGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 148954 0.73 0.431037
Target:  5'- cCCGC-CCCgCCCaCCCGCGCucCACAGGc -3'
miRNA:   3'- -GGUGaGGG-GGGcGGGUGCGu-GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 126473 0.77 0.257523
Target:  5'- gCUACUCCCCCguCGCCCACcC-CGCGAGg -3'
miRNA:   3'- -GGUGAGGGGG--GCGGGUGcGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 81828 0.71 0.502285
Target:  5'- cCCGCUCCCCCCuGCUgcUGCAgCACGGa -3'
miRNA:   3'- -GGUGAGGGGGG-CGGguGCGU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 69095 0.76 0.26951
Target:  5'- cUCAcCUCCugguCCCCGCCCGCGCACgACAu- -3'
miRNA:   3'- -GGU-GAGG----GGGGCGGGUGCGUG-UGUuc -5'
4040 3' -59.8 NC_001650.1 + 156161 0.73 0.422548
Target:  5'- cCCACgUCCuCCCCGCCCuCGCAgAUg-- -3'
miRNA:   3'- -GGUG-AGG-GGGGCGGGuGCGUgUGuuc -5'
4040 3' -59.8 NC_001650.1 + 19231 0.71 0.502285
Target:  5'- aCAUgcagCCCCUCGUUCAC-CACACAGGg -3'
miRNA:   3'- gGUGa---GGGGGGCGGGUGcGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 128104 0.71 0.52091
Target:  5'- aCCACcaaaCCCCaucguCGCCCACGCGCcCAAc -3'
miRNA:   3'- -GGUGa---GGGGg----GCGGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 133227 0.76 0.287684
Target:  5'- cCCGCgcccccgUCCCCCCGCagcuCGCACACGGGc -3'
miRNA:   3'- -GGUG-------AGGGGGGCGggu-GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 153542 0.74 0.366062
Target:  5'- cCCGCUCgCCCCG-CgGCGCGCGCGu- -3'
miRNA:   3'- -GGUGAGgGGGGCgGgUGCGUGUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.