miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 50718 0.69 0.626974
Target:  5'- cUCGCUCucgccuuugCCCUCGCCCGCGCuuuCGCu-- -3'
miRNA:   3'- -GGUGAG---------GGGGGCGGGUGCGu--GUGuuc -5'
4040 3' -59.8 NC_001650.1 + 123454 0.71 0.511563
Target:  5'- cCCGCg-CCCCUGCCCA-GCACcuACGGGg -3'
miRNA:   3'- -GGUGagGGGGGCGGGUgCGUG--UGUUC- -5'
4040 3' -59.8 NC_001650.1 + 69095 0.76 0.26951
Target:  5'- cUCAcCUCCugguCCCCGCCCGCGCACgACAu- -3'
miRNA:   3'- -GGU-GAGG----GGGGCGGGUGCGUG-UGUuc -5'
4040 3' -59.8 NC_001650.1 + 127947 0.69 0.623058
Target:  5'- aCCACcCCCCCCGUCCuuCGCccaacccccucucCGCGAGc -3'
miRNA:   3'- -GGUGaGGGGGGCGGGu-GCGu------------GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 126473 0.77 0.257523
Target:  5'- gCUACUCCCCCguCGCCCACcC-CGCGAGg -3'
miRNA:   3'- -GGUGAGGGGG--GCGGGUGcGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 58033 0.67 0.751838
Target:  5'- gCCGCgguUCCUCCCuuuuuuUCCACGCACcCGAGa -3'
miRNA:   3'- -GGUG---AGGGGGGc-----GGGUGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 157272 0.75 0.336204
Target:  5'- gCACUCCCCCaCGCgCACGCuCugGAu -3'
miRNA:   3'- gGUGAGGGGG-GCGgGUGCGuGugUUc -5'
4040 3' -59.8 NC_001650.1 + 38129 0.67 0.742588
Target:  5'- gCCAgUUCCCCCUGCUgAC-CAC-CAAGa -3'
miRNA:   3'- -GGU-GAGGGGGGCGGgUGcGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 41040 0.68 0.699024
Target:  5'- ----aCCCCCCGCagcagagggucucgCACGUACACGAGc -3'
miRNA:   3'- ggugaGGGGGGCGg-------------GUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 161590 0.68 0.685514
Target:  5'- aCGCgCCCCCCGCgCGCuggggGCGCugAAa -3'
miRNA:   3'- gGUGaGGGGGGCGgGUG-----CGUGugUUc -5'
4040 3' -59.8 NC_001650.1 + 62079 0.68 0.675814
Target:  5'- cCCcCUCCCgCCGCCCcCGCcCcCGAGc -3'
miRNA:   3'- -GGuGAGGGgGGCGGGuGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 54229 0.69 0.665107
Target:  5'- cCCGCgCCgCCCUcagcagccucaggGCCCGCGC-CACGGGc -3'
miRNA:   3'- -GGUGaGG-GGGG-------------CGGGUGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 75661 0.69 0.646549
Target:  5'- uCCGCUCCCCCUccuccCCCAgcCGCgGCGgGAGg -3'
miRNA:   3'- -GGUGAGGGGGGc----GGGU--GCG-UGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 51002 0.7 0.607413
Target:  5'- cCCGCUCCCagCC-CCCACGC-CGCu-- -3'
miRNA:   3'- -GGUGAGGGg-GGcGGGUGCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 147552 0.7 0.578214
Target:  5'- gCC-CUCCCgCCCGgCCACguccaGCAgGCAGGa -3'
miRNA:   3'- -GGuGAGGG-GGGCgGGUG-----CGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 68362 0.7 0.568543
Target:  5'- gCACUCagCCaCCGCCCAacugcccucuggUGUACACAGGa -3'
miRNA:   3'- gGUGAGg-GG-GGCGGGU------------GCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 103704 0.71 0.52091
Target:  5'- -gGC-CUCCCCGuCCCAC-CACACGAGc -3'
miRNA:   3'- ggUGaGGGGGGC-GGGUGcGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 81828 0.71 0.502285
Target:  5'- cCCGCUCCCCCCuGCUgcUGCAgCACGGa -3'
miRNA:   3'- -GGUGAGGGGGG-CGGguGCGU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 148410 0.72 0.457086
Target:  5'- gCCGCgCCCCCCuggcgcgggacgGCCgC-CGCGCACGAGu -3'
miRNA:   3'- -GGUGaGGGGGG------------CGG-GuGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 160476 0.74 0.373807
Target:  5'- uCCGC-CCCCCgCGCgCCGCGaggaCGCGCAGGa -3'
miRNA:   3'- -GGUGaGGGGG-GCG-GGUGC----GUGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.