miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 75661 0.69 0.646549
Target:  5'- uCCGCUCCCCCUccuccCCCAgcCGCgGCGgGAGg -3'
miRNA:   3'- -GGUGAGGGGGGc----GGGU--GCG-UGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 112365 0.69 0.666082
Target:  5'- aCUuCUCCUCCUGCCCGUGCAC-CAu- -3'
miRNA:   3'- -GGuGAGGGGGGCGGGUGCGUGuGUuc -5'
4040 3' -59.8 NC_001650.1 + 75722 0.74 0.353903
Target:  5'- aCCcCUCCaCCCCGuccagguagagggacCCCACGCGCACGu- -3'
miRNA:   3'- -GGuGAGG-GGGGC---------------GGGUGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 122912 0.74 0.389626
Target:  5'- aCCugUCCCagcuCCagauaGCCCACGCcCACGGGg -3'
miRNA:   3'- -GGugAGGG----GGg----CGGGUGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 154974 0.72 0.474914
Target:  5'- uCCAC-CCCCCUGCCUAUgaaGUACcCGAGg -3'
miRNA:   3'- -GGUGaGGGGGGCGGGUG---CGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 19231 0.71 0.502285
Target:  5'- aCAUgcagCCCCUCGUUCAC-CACACAGGg -3'
miRNA:   3'- gGUGa---GGGGGGCGGGUGcGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 117473 0.71 0.549331
Target:  5'- cCCACUCCCCCaagauagGCUCcugcgGCGC-CGCGAGc -3'
miRNA:   3'- -GGUGAGGGGGg------CGGG-----UGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 136134 0.7 0.568543
Target:  5'- aCCGC-CCUgcaCCUGUCCACGCACAUg-- -3'
miRNA:   3'- -GGUGaGGG---GGGCGGGUGCGUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 117557 0.7 0.591811
Target:  5'- -uGCUCCCCCgggacggcagcaucaCGCCCAgGCACAa--- -3'
miRNA:   3'- ggUGAGGGGG---------------GCGGGUgCGUGUguuc -5'
4040 3' -59.8 NC_001650.1 + 95527 0.7 0.607413
Target:  5'- cCCGCUCCa-UCGCCCGCGC-CGCc-- -3'
miRNA:   3'- -GGUGAGGggGGCGGGUGCGuGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 85759 0.66 0.821704
Target:  5'- uCCACaCCCUCCGCCCcCcuCACACc-- -3'
miRNA:   3'- -GGUGaGGGGGGCGGGuGc-GUGUGuuc -5'
4040 3' -59.8 NC_001650.1 + 51225 0.66 0.813445
Target:  5'- cCCGCgCCCCCUcccaGCgugucucuaucCCGCGCGgGCGAGc -3'
miRNA:   3'- -GGUGaGGGGGG----CG-----------GGUGCGUgUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 105315 0.68 0.685514
Target:  5'- aCCAagcgCCUCCCGUCCccgcuGCGCACcuuCAGGg -3'
miRNA:   3'- -GGUga--GGGGGGCGGG-----UGCGUGu--GUUC- -5'
4040 3' -59.8 NC_001650.1 + 75112 0.68 0.695173
Target:  5'- uCCAcCUCCCCCaggaCGCCCaggACGCucaGCACGu- -3'
miRNA:   3'- -GGU-GAGGGGG----GCGGG---UGCG---UGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 38129 0.67 0.742588
Target:  5'- gCCAgUUCCCCCUGCUgAC-CAC-CAAGa -3'
miRNA:   3'- -GGU-GAGGGGGGCGGgUGcGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 58033 0.67 0.751838
Target:  5'- gCCGCgguUCCUCCCuuuuuuUCCACGCACcCGAGa -3'
miRNA:   3'- -GGUG---AGGGGGGc-----GGGUGCGUGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 134448 0.67 0.760992
Target:  5'- -uGCUCCCCCCuaUgAgGCACACcGGc -3'
miRNA:   3'- ggUGAGGGGGGcgGgUgCGUGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 125246 0.67 0.778978
Target:  5'- cCUGCUCCUCCCggGCCCGUGC-CAgAAGc -3'
miRNA:   3'- -GGUGAGGGGGG--CGGGUGCGuGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 103315 0.66 0.796483
Target:  5'- uCCACUCgguCCCCCGUCUcCGUgACGCcAGa -3'
miRNA:   3'- -GGUGAG---GGGGGCGGGuGCG-UGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 94737 0.66 0.796483
Target:  5'- cCCACgcgaaCCCCGCCUcgGCGgcccaGCGCAGGa -3'
miRNA:   3'- -GGUGagg--GGGGCGGG--UGCg----UGUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.