miRNA display CGI


Results 81 - 100 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 55960 0.7 0.607413
Target:  5'- cCCAC-CCCCUCgggcacggGCCCGuagGCGCGCAGGg -3'
miRNA:   3'- -GGUGaGGGGGG--------CGGGUg--CGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 117344 0.7 0.578214
Target:  5'- cCgGCUCgCCCCCGCCCccgGCGCcuccCGCGGc -3'
miRNA:   3'- -GgUGAG-GGGGGCGGG---UGCGu---GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 54184 0.66 0.787795
Target:  5'- cCCGCUCCCCCuCGUcgaUCugGCcCuuGAGg -3'
miRNA:   3'- -GGUGAGGGGG-GCG---GGugCGuGugUUC- -5'
4040 3' -59.8 NC_001650.1 + 103315 0.66 0.796483
Target:  5'- uCCACUCgguCCCCCGUCUcCGUgACGCcAGa -3'
miRNA:   3'- -GGUGAG---GGGGGCGGGuGCG-UGUGuUC- -5'
4040 3' -59.8 NC_001650.1 + 41040 0.68 0.699024
Target:  5'- ----aCCCCCCGCagcagagggucucgCACGUACACGAGc -3'
miRNA:   3'- ggugaGGGGGGCGg-------------GUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 145845 0.67 0.755512
Target:  5'- uCCACgcccugCCCCCgGUaaucugucuuggaguCCACGUACGCGGc -3'
miRNA:   3'- -GGUGa-----GGGGGgCG---------------GGUGCGUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 155554 0.67 0.751838
Target:  5'- aCGgUCUCCCUGgCCGCGCGCuCGGc -3'
miRNA:   3'- gGUgAGGGGGGCgGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 95501 0.68 0.685514
Target:  5'- -gGCUCCCCCUcCCCGgCGCcCGCAc- -3'
miRNA:   3'- ggUGAGGGGGGcGGGU-GCGuGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 119903 0.67 0.760992
Target:  5'- gCACUCggggCCgUCGCCCACGCugaaggcgaACACGAa -3'
miRNA:   3'- gGUGAG----GGgGGCGGGUGCG---------UGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 24535 0.67 0.770041
Target:  5'- gCCcCUaCCCCCUGgCCGCGCuggACGCGc- -3'
miRNA:   3'- -GGuGA-GGGGGGCgGGUGCG---UGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 3648 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 70404 0.68 0.685514
Target:  5'- gCACUCCUCCCaggagacgGCCCugGaCGuCACAGa -3'
miRNA:   3'- gGUGAGGGGGG--------CGGGugC-GU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 67164 0.69 0.666082
Target:  5'- ---aUCUCCCCGCCCGCGU-C-CGAGa -3'
miRNA:   3'- ggugAGGGGGGCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 113539 0.67 0.778978
Target:  5'- gUAC-CCCauCCCGCCCACGCAgAa--- -3'
miRNA:   3'- gGUGaGGG--GGGCGGGUGCGUgUguuc -5'
4040 3' -59.8 NC_001650.1 + 145173 0.67 0.778978
Target:  5'- cCUGCaaCCCCCGUCCcCGCGCAguaAAGa -3'
miRNA:   3'- -GGUGagGGGGGCGGGuGCGUGUg--UUC- -5'
4040 3' -59.8 NC_001650.1 + 136064 0.67 0.778978
Target:  5'- gUACUCCCCCaGCCC-CGCGgcCGCc-- -3'
miRNA:   3'- gGUGAGGGGGgCGGGuGCGU--GUGuuc -5'
4040 3' -59.8 NC_001650.1 + 73658 0.67 0.770041
Target:  5'- aCCACUCCCUCUcugacccgGCCUACGaguuCAGGg -3'
miRNA:   3'- -GGUGAGGGGGG--------CGGGUGCguguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 70532 0.67 0.770041
Target:  5'- -aGCUCaggagcgCCCCGCCCAUGUuuaucUACAAGa -3'
miRNA:   3'- ggUGAGg------GGGGCGGGUGCGu----GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 68270 0.71 0.52091
Target:  5'- gUCGCUCCUCCC-CCgGCGCAC-CAGc -3'
miRNA:   3'- -GGUGAGGGGGGcGGgUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 129252 0.71 0.502285
Target:  5'- cCCACUCCCugguggCCCGCuCCGC-CGC-CAAGg -3'
miRNA:   3'- -GGUGAGGG------GGGCG-GGUGcGUGuGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.