miRNA display CGI


Results 101 - 120 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 3' -59.8 NC_001650.1 + 76955 0.67 0.751838
Target:  5'- aCCACcgCCCCCaUGCCCGUGC-C-CGAGg -3'
miRNA:   3'- -GGUGa-GGGGG-GCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 155554 0.67 0.751838
Target:  5'- aCGgUCUCCCUGgCCGCGCGCuCGGc -3'
miRNA:   3'- gGUgAGGGGGGCgGGUGCGUGuGUUc -5'
4040 3' -59.8 NC_001650.1 + 145845 0.67 0.755512
Target:  5'- uCCACgcccugCCCCCgGUaaucugucuuggaguCCACGUACGCGGc -3'
miRNA:   3'- -GGUGa-----GGGGGgCG---------------GGUGCGUGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 113539 0.67 0.778978
Target:  5'- gUAC-CCCauCCCGCCCACGCAgAa--- -3'
miRNA:   3'- gGUGaGGG--GGGCGGGUGCGUgUguuc -5'
4040 3' -59.8 NC_001650.1 + 145173 0.67 0.778978
Target:  5'- cCUGCaaCCCCCGUCCcCGCGCAguaAAGa -3'
miRNA:   3'- -GGUGagGGGGGCGGGuGCGUGUg--UUC- -5'
4040 3' -59.8 NC_001650.1 + 119903 0.67 0.760992
Target:  5'- gCACUCggggCCgUCGCCCACGCugaaggcgaACACGAa -3'
miRNA:   3'- gGUGAG----GGgGGCGGGUGCG---------UGUGUUc -5'
4040 3' -59.8 NC_001650.1 + 73658 0.67 0.770041
Target:  5'- aCCACUCCCUCUcugacccgGCCUACGaguuCAGGg -3'
miRNA:   3'- -GGUGAGGGGGG--------CGGGUGCguguGUUC- -5'
4040 3' -59.8 NC_001650.1 + 157299 0.67 0.742588
Target:  5'- gCAC-CUCCCCGCCCcCGCccucGCcCAGGu -3'
miRNA:   3'- gGUGaGGGGGGCGGGuGCG----UGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 131512 0.67 0.742588
Target:  5'- gCCAUgaccCUCUUCGCCCACGCGguCAAc -3'
miRNA:   3'- -GGUGa---GGGGGGCGGGUGCGUguGUUc -5'
4040 3' -59.8 NC_001650.1 + 92957 0.67 0.733249
Target:  5'- aCCG-UCCCCCCGCCCGagaugaGCugGu--- -3'
miRNA:   3'- -GGUgAGGGGGGCGGGUg-----CGugUguuc -5'
4040 3' -59.8 NC_001650.1 + 16804 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 183511 0.69 0.666082
Target:  5'- -gGCUgaCCCC-CUCAUGCACACAGGg -3'
miRNA:   3'- ggUGAggGGGGcGGGUGCGUGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 67164 0.69 0.666082
Target:  5'- ---aUCUCCCCGCCCGCGU-C-CGAGa -3'
miRNA:   3'- ggugAGGGGGGCGGGUGCGuGuGUUC- -5'
4040 3' -59.8 NC_001650.1 + 70404 0.68 0.685514
Target:  5'- gCACUCCUCCCaggagacgGCCCugGaCGuCACAGa -3'
miRNA:   3'- gGUGAGGGGGG--------CGGGugC-GU-GUGUUc -5'
4040 3' -59.8 NC_001650.1 + 3648 0.68 0.685514
Target:  5'- gCCGa-CCCCCCGUCCcCGU-CACGGGg -3'
miRNA:   3'- -GGUgaGGGGGGCGGGuGCGuGUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 95501 0.68 0.685514
Target:  5'- -gGCUCCCCCUcCCCGgCGCcCGCAc- -3'
miRNA:   3'- ggUGAGGGGGGcGGGU-GCGuGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 131232 0.68 0.71434
Target:  5'- cCCGgUCCCcgagaCCCugguGCCCaACGCGCAgGAGg -3'
miRNA:   3'- -GGUgAGGG-----GGG----CGGG-UGCGUGUgUUC- -5'
4040 3' -59.8 NC_001650.1 + 148624 0.68 0.723831
Target:  5'- aCC-CUCCCCCagGCgCuCGCACGCGc- -3'
miRNA:   3'- -GGuGAGGGGGg-CGgGuGCGUGUGUuc -5'
4040 3' -59.8 NC_001650.1 + 158636 0.68 0.723831
Target:  5'- aCCugUCCCCCCcucccUCCAgGCGgcUACGGGg -3'
miRNA:   3'- -GGugAGGGGGGc----GGGUgCGU--GUGUUC- -5'
4040 3' -59.8 NC_001650.1 + 24535 0.67 0.770041
Target:  5'- gCCcCUaCCCCCUGgCCGCGCuggACGCGc- -3'
miRNA:   3'- -GGuGA-GGGGGGCgGGUGCG---UGUGUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.