miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4040 5' -56.3 NC_001650.1 + 61476 0.66 0.924597
Target:  5'- gGCCCCGaagUGCCUGG-UCaGGGAGAa- -3'
miRNA:   3'- -CGGGGUa--ACGGGUUgAGaCCCUCUca -5'
4040 5' -56.3 NC_001650.1 + 52550 0.66 0.919097
Target:  5'- cCUCCAccGCCCccCUCaGGGAGGGg -3'
miRNA:   3'- cGGGGUaaCGGGuuGAGaCCCUCUCa -5'
4040 5' -56.3 NC_001650.1 + 1759 0.66 0.919097
Target:  5'- uCCCCAUUGgCCAuggaggccCUgUGGGAG-GUg -3'
miRNA:   3'- cGGGGUAACgGGUu-------GAgACCCUCuCA- -5'
4040 5' -56.3 NC_001650.1 + 168466 0.66 0.919097
Target:  5'- uCCCCAUUGgCCAuggaggccCUgUGGGAG-GUg -3'
miRNA:   3'- cGGGGUAACgGGUu-------GAgACCCUCuCA- -5'
4040 5' -56.3 NC_001650.1 + 1891 0.66 0.913362
Target:  5'- uCCCUAUUgGCCUAaaaaGCUCUGuGGGAGg -3'
miRNA:   3'- cGGGGUAA-CGGGU----UGAGACcCUCUCa -5'
4040 5' -56.3 NC_001650.1 + 168598 0.66 0.913362
Target:  5'- uCCCUAUUgGCCUAaaaaGCUCUGuGGGAGg -3'
miRNA:   3'- cGGGGUAA-CGGGU----UGAGACcCUCUCa -5'
4040 5' -56.3 NC_001650.1 + 123458 0.66 0.913362
Target:  5'- cGCCCC--UGCCCAGCacCUacGGGGAGc -3'
miRNA:   3'- -CGGGGuaACGGGUUGa-GAc-CCUCUCa -5'
4040 5' -56.3 NC_001650.1 + 24743 0.66 0.907393
Target:  5'- aGCCUCGgcGCCCGcCUCUuGGGuuuuGGGGUu -3'
miRNA:   3'- -CGGGGUaaCGGGUuGAGA-CCC----UCUCA- -5'
4040 5' -56.3 NC_001650.1 + 57722 0.66 0.9037
Target:  5'- aGUCCCucuuccucUUGCCCGGC-CUcgcggggugggcgacGGGGGAGUa -3'
miRNA:   3'- -CGGGGu-------AACGGGUUGaGA---------------CCCUCUCA- -5'
4040 5' -56.3 NC_001650.1 + 146972 0.66 0.901192
Target:  5'- cGCCCUugauugGCCCGggGCUCUGGaccaaucaGAGGGc -3'
miRNA:   3'- -CGGGGuaa---CGGGU--UGAGACC--------CUCUCa -5'
4040 5' -56.3 NC_001650.1 + 175618 0.66 0.894762
Target:  5'- uCUCUcUUGCCCAGCcacGGGGGAGUc -3'
miRNA:   3'- cGGGGuAACGGGUUGagaCCCUCUCA- -5'
4040 5' -56.3 NC_001650.1 + 8911 0.66 0.894762
Target:  5'- uCUCUcUUGCCCAGCcacGGGGGAGUc -3'
miRNA:   3'- cGGGGuAACGGGUUGagaCCCUCUCA- -5'
4040 5' -56.3 NC_001650.1 + 110814 0.67 0.888107
Target:  5'- aGCCUCAgagccaggcUGCCCAGCccauucccgUCauaggGGGAGGGUg -3'
miRNA:   3'- -CGGGGUa--------ACGGGUUG---------AGa----CCCUCUCA- -5'
4040 5' -56.3 NC_001650.1 + 168729 0.67 0.888107
Target:  5'- uCCCCAUUGgCCAuggagGCcagGGGGGAGg -3'
miRNA:   3'- cGGGGUAACgGGU-----UGagaCCCUCUCa -5'
4040 5' -56.3 NC_001650.1 + 2022 0.67 0.888107
Target:  5'- uCCCCAUUGgCCAuggagGCcagGGGGGAGg -3'
miRNA:   3'- cGGGGUAACgGGU-----UGagaCCCUCUCa -5'
4040 5' -56.3 NC_001650.1 + 77143 0.67 0.888107
Target:  5'- gGCCCCGUcGCCCAugaGCUCgGuGGuGAa- -3'
miRNA:   3'- -CGGGGUAaCGGGU---UGAGaC-CCuCUca -5'
4040 5' -56.3 NC_001650.1 + 74828 0.67 0.881228
Target:  5'- cGCCCUGcUGCCCAACUCccUGGcAGGc- -3'
miRNA:   3'- -CGGGGUaACGGGUUGAG--ACCcUCUca -5'
4040 5' -56.3 NC_001650.1 + 127402 0.67 0.881228
Target:  5'- aGCCCCGagaGCCCGgAC-CUGGGcagcgAGAGg -3'
miRNA:   3'- -CGGGGUaa-CGGGU-UGaGACCC-----UCUCa -5'
4040 5' -56.3 NC_001650.1 + 180856 0.67 0.881228
Target:  5'- cGCCCCAcgugGCCCGuuguaACcaaUGGGAGAa- -3'
miRNA:   3'- -CGGGGUaa--CGGGU-----UGag-ACCCUCUca -5'
4040 5' -56.3 NC_001650.1 + 75181 0.67 0.881228
Target:  5'- cGCUCCAggcucagGCCgGGCUUUuucaGGGGGAGg -3'
miRNA:   3'- -CGGGGUaa-----CGGgUUGAGA----CCCUCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.