miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4041 3' -49.4 NC_001650.1 + 136086 0.66 0.999203
Target:  5'- gCCAUGAAGGcGggG-GCGGccUugUCCa -3'
miRNA:   3'- gGGUACUUCC-CaaCaCGUU--AugAGGa -5'
4041 3' -49.4 NC_001650.1 + 131674 0.66 0.999203
Target:  5'- uCCC-UGAGGGGggcgGUGgaGGUGCUCa- -3'
miRNA:   3'- -GGGuACUUCCCaa--CACg-UUAUGAGga -5'
4041 3' -49.4 NC_001650.1 + 52234 0.66 0.999203
Target:  5'- gCCCAUGuccagcGGGg---GCAgcGUGCUCCa -3'
miRNA:   3'- -GGGUACuu----CCCaacaCGU--UAUGAGGa -5'
4041 3' -49.4 NC_001650.1 + 66823 0.66 0.999024
Target:  5'- gUCGUGggGGGU---GCAGUaugACUCCc -3'
miRNA:   3'- gGGUACuuCCCAacaCGUUA---UGAGGa -5'
4041 3' -49.4 NC_001650.1 + 147770 0.66 0.999024
Target:  5'- aCCCGUGGAGGGcgaccgGgGAacacGCUCCUg -3'
miRNA:   3'- -GGGUACUUCCCaaca--CgUUa---UGAGGA- -5'
4041 3' -49.4 NC_001650.1 + 172867 0.67 0.998267
Target:  5'- gCCAU--GGGGUUGaguggGCAGUGCcCCUu -3'
miRNA:   3'- gGGUAcuUCCCAACa----CGUUAUGaGGA- -5'
4041 3' -49.4 NC_001650.1 + 6160 0.67 0.998267
Target:  5'- gCCAU--GGGGUUGaguggGCAGUGCcCCUu -3'
miRNA:   3'- gGGUAcuUCCCAACa----CGUUAUGaGGA- -5'
4041 3' -49.4 NC_001650.1 + 173031 0.67 0.998267
Target:  5'- gCCAU--GGGGUUGaguggGCAGUGCcCCUu -3'
miRNA:   3'- gGGUAcuUCCCAACa----CGUUAUGaGGA- -5'
4041 3' -49.4 NC_001650.1 + 6324 0.67 0.998267
Target:  5'- gCCAU--GGGGUUGaguggGCAGUGCcCCUu -3'
miRNA:   3'- gGGUAcuUCCCAACa----CGUUAUGaGGA- -5'
4041 3' -49.4 NC_001650.1 + 135486 0.67 0.997065
Target:  5'- gCCCGUGGAGGcGcagGUGgugaGAUACUUCUc -3'
miRNA:   3'- -GGGUACUUCC-Caa-CACg---UUAUGAGGA- -5'
4041 3' -49.4 NC_001650.1 + 1628 0.67 0.996479
Target:  5'- cCCCAUuggccgaGAGGGGauaUUGUGCAAUGC-Ca- -3'
miRNA:   3'- -GGGUA-------CUUCCC---AACACGUUAUGaGga -5'
4041 3' -49.4 NC_001650.1 + 168335 0.67 0.996479
Target:  5'- cCCCAUuggccgaGAGGGGauaUUGUGCAAUGC-Ca- -3'
miRNA:   3'- -GGGUA-------CUUCCC---AACACGUUAUGaGga -5'
4041 3' -49.4 NC_001650.1 + 182830 0.68 0.995243
Target:  5'- -aCAUGucaguGGGGggGUGCAGUACUa-- -3'
miRNA:   3'- ggGUACu----UCCCaaCACGUUAUGAgga -5'
4041 3' -49.4 NC_001650.1 + 16123 0.68 0.995243
Target:  5'- -aCAUGucaguGGGGggGUGCAGUACUa-- -3'
miRNA:   3'- ggGUACu----UCCCaaCACGUUAUGAgga -5'
4041 3' -49.4 NC_001650.1 + 92169 0.68 0.993581
Target:  5'- cCCCAUGAAGGcGguggUGgGCAGcacCUCCa -3'
miRNA:   3'- -GGGUACUUCC-Ca---ACaCGUUau-GAGGa -5'
4041 3' -49.4 NC_001650.1 + 61248 0.69 0.988875
Target:  5'- gCCaCGUGGAGGGcgGUGgccUGCUCCa -3'
miRNA:   3'- -GG-GUACUUCCCaaCACguuAUGAGGa -5'
4041 3' -49.4 NC_001650.1 + 71165 0.69 0.987358
Target:  5'- cCCCcUGAacAGGaGgc-UGCAGUACUCCUa -3'
miRNA:   3'- -GGGuACU--UCC-CaacACGUUAUGAGGA- -5'
4041 3' -49.4 NC_001650.1 + 169490 0.69 0.985686
Target:  5'- gCCCAUaAAGGGcUGUGCGAcGCccCCUa -3'
miRNA:   3'- -GGGUAcUUCCCaACACGUUaUGa-GGA- -5'
4041 3' -49.4 NC_001650.1 + 2783 0.69 0.985686
Target:  5'- gCCCAUaAAGGGcUGUGCGAcGCccCCUa -3'
miRNA:   3'- -GGGUAcUUCCCaACACGUUaUGa-GGA- -5'
4041 3' -49.4 NC_001650.1 + 91044 0.7 0.983851
Target:  5'- aCCGUcuuGGGGgcgGUGgGGUACUCCUu -3'
miRNA:   3'- gGGUAcu-UCCCaa-CACgUUAUGAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.