Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4041 | 5' | -49.9 | NC_001650.1 | + | 49218 | 0.66 | 0.997577 |
Target: 5'- ---cUGGUGCU-CACCCCCCuGCg--- -3' miRNA: 3'- cauuAUCAUGAcGUGGGGGG-UGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 54666 | 0.66 | 0.997577 |
Target: 5'- ----cAGcACUGCAgCCCCCGCc--- -3' miRNA: 3'- cauuaUCaUGACGUgGGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 106141 | 0.66 | 0.996588 |
Target: 5'- cGUGGUAGUuCUcGCACgCCCUACa--- -3' miRNA: 3'- -CAUUAUCAuGA-CGUGgGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 19803 | 0.66 | 0.996588 |
Target: 5'- ---cUGGUAgaGCACgCCCCGCg--- -3' miRNA: 3'- cauuAUCAUgaCGUGgGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 71448 | 0.66 | 0.996588 |
Target: 5'- ----gAGUACgaGCAgcCCCCCCACa--- -3' miRNA: 3'- cauuaUCAUGa-CGU--GGGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 77264 | 0.66 | 0.995287 |
Target: 5'- --cGUGGUgACcGCGCCCCCCAg---- -3' miRNA: 3'- cauUAUCA-UGaCGUGGGGGGUgauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 154805 | 0.66 | 0.995287 |
Target: 5'- ------cUGCUGCACCCUCCucCUGAc -3' miRNA: 3'- cauuaucAUGACGUGGGGGGu-GAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 25091 | 0.66 | 0.995287 |
Target: 5'- cUGGUGGUGCUGCucguacagaGCCCaCCCAg---- -3' miRNA: 3'- cAUUAUCAUGACG---------UGGG-GGGUgauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 63142 | 0.66 | 0.995287 |
Target: 5'- ----cAGgACggGCGCCCCCCGCg--- -3' miRNA: 3'- cauuaUCaUGa-CGUGGGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 93486 | 0.66 | 0.995213 |
Target: 5'- uGUAcUGGUuuuacaacagcugGCUGCagACCCCCCugUAc- -3' miRNA: 3'- -CAUuAUCA-------------UGACG--UGGGGGGugAUua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 24641 | 0.67 | 0.9945 |
Target: 5'- uUGAUGGUGCUGU-CUCCUC-CUGAUa -3' miRNA: 3'- cAUUAUCAUGACGuGGGGGGuGAUUA- -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 131979 | 0.67 | 0.9945 |
Target: 5'- --uGUGGaGCacGCugCCCCCGCUGGa -3' miRNA: 3'- cauUAUCaUGa-CGugGGGGGUGAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 76342 | 0.67 | 0.994244 |
Target: 5'- -aAAUGGUGCucuugaggucggcgUGCGCCCCCuCGCc--- -3' miRNA: 3'- caUUAUCAUG--------------ACGUGGGGG-GUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 156993 | 0.67 | 0.992607 |
Target: 5'- --uAUGGUgagGCUGCagucgcccGCCCCCCugUGGc -3' miRNA: 3'- cauUAUCA---UGACG--------UGGGGGGugAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 17981 | 0.67 | 0.992607 |
Target: 5'- gGUGA-AGaAgaGCGCCCCCCACg--- -3' miRNA: 3'- -CAUUaUCaUgaCGUGGGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 117469 | 0.67 | 0.992607 |
Target: 5'- -----cGUGCggcggaGCGCCCCCCACc--- -3' miRNA: 3'- cauuauCAUGa-----CGUGGGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 162017 | 0.67 | 0.991483 |
Target: 5'- ---cUAGUACUGUauuguugaACCCCCCAggAAa -3' miRNA: 3'- cauuAUCAUGACG--------UGGGGGGUgaUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 162836 | 0.67 | 0.991483 |
Target: 5'- cGUAGaAGUACacagucgcGCGCCCCCCuCUGGc -3' miRNA: 3'- -CAUUaUCAUGa-------CGUGGGGGGuGAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 148609 | 0.68 | 0.981652 |
Target: 5'- --------uCUGCACCCCCCACc--- -3' miRNA: 3'- cauuaucauGACGUGGGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 59762 | 0.69 | 0.97941 |
Target: 5'- ----gGGgGCgagGCGCCCCCCACg--- -3' miRNA: 3'- cauuaUCaUGa--CGUGGGGGGUGauua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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