miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4041 5' -49.9 NC_001650.1 + 56451 0.69 0.97941
Target:  5'- cUGAUAGaggcuCUGCcucGCCCCUCGCUGAc -3'
miRNA:   3'- cAUUAUCau---GACG---UGGGGGGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 153197 0.69 0.974324
Target:  5'- -aAGUGGgaggGCGCCCCCCGCc--- -3'
miRNA:   3'- caUUAUCaugaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 78830 0.69 0.968381
Target:  5'- ---cUGGUGCUGaGCCCCCC-CUGc- -3'
miRNA:   3'- cauuAUCAUGACgUGGGGGGuGAUua -5'
4041 5' -49.9 NC_001650.1 + 54843 0.69 0.968381
Target:  5'- gGUAcUGGguuCUGCA-CCCCCACUGGg -3'
miRNA:   3'- -CAUuAUCau-GACGUgGGGGGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 160738 0.7 0.961522
Target:  5'- ----gGGcGCUGCACaCCCCGCUGAc -3'
miRNA:   3'- cauuaUCaUGACGUGgGGGGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 34232 0.7 0.956546
Target:  5'- ----aAGUACUGCugCCaagauggauacuguCCCACUGGUg -3'
miRNA:   3'- cauuaUCAUGACGugGG--------------GGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 113048 0.7 0.953693
Target:  5'- aGUAggAGUACUGCAgCCUCCugUu-- -3'
miRNA:   3'- -CAUuaUCAUGACGUgGGGGGugAuua -5'
4041 5' -49.9 NC_001650.1 + 124161 0.7 0.953693
Target:  5'- -cGAUGGgaACaGCGCCCCaCCACUAGa -3'
miRNA:   3'- caUUAUCa-UGaCGUGGGG-GGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 161587 0.7 0.949403
Target:  5'- -----cGUAC-GCGCCCCCCGCg--- -3'
miRNA:   3'- cauuauCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 36621 0.71 0.944856
Target:  5'- uGUAGcGGUugUcCACCCCCCugUAGc -3'
miRNA:   3'- -CAUUaUCAugAcGUGGGGGGugAUUa -5'
4041 5' -49.9 NC_001650.1 + 50499 0.71 0.940049
Target:  5'- ----gGGUGuCUgGCGCCCCCCGCUc-- -3'
miRNA:   3'- cauuaUCAU-GA-CGUGGGGGGUGAuua -5'
4041 5' -49.9 NC_001650.1 + 74950 0.71 0.934981
Target:  5'- -------aGCgggGCGCCCCCCACUAu- -3'
miRNA:   3'- cauuaucaUGa--CGUGGGGGGUGAUua -5'
4041 5' -49.9 NC_001650.1 + 110838 0.71 0.924052
Target:  5'- -aGGUAGUugUGCAUCUCCCugUc-- -3'
miRNA:   3'- caUUAUCAugACGUGGGGGGugAuua -5'
4041 5' -49.9 NC_001650.1 + 167533 0.77 0.700153
Target:  5'- aUAAUAGUACcGCACCCCCC-Cg--- -3'
miRNA:   3'- cAUUAUCAUGaCGUGGGGGGuGauua -5'
4041 5' -49.9 NC_001650.1 + 826 0.77 0.700153
Target:  5'- aUAAUAGUACcGCACCCCCC-Cg--- -3'
miRNA:   3'- cAUUAUCAUGaCGUGGGGGGuGauua -5'
4041 5' -49.9 NC_001650.1 + 117399 0.78 0.625207
Target:  5'- -gAGUcaUACUGCACCCCCCACg--- -3'
miRNA:   3'- caUUAucAUGACGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 2830 0.85 0.311768
Target:  5'- aGUAAUAGUACcGCACCCCCCcauCUAAa -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGu--GAUUa -5'
4041 5' -49.9 NC_001650.1 + 169537 0.85 0.311768
Target:  5'- aGUAAUAGUACcGCACCCCCCcauCUAAa -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGu--GAUUa -5'
4041 5' -49.9 NC_001650.1 + 167719 0.86 0.255948
Target:  5'- aUAAUAGUACcGCACCCCCCACa--- -3'
miRNA:   3'- cAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 169248 0.86 0.255948
Target:  5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.