miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4041 5' -49.9 NC_001650.1 + 49218 0.66 0.997577
Target:  5'- ---cUGGUGCU-CACCCCCCuGCg--- -3'
miRNA:   3'- cauuAUCAUGAcGUGGGGGG-UGauua -5'
4041 5' -49.9 NC_001650.1 + 50499 0.71 0.940049
Target:  5'- ----gGGUGuCUgGCGCCCCCCGCUc-- -3'
miRNA:   3'- cauuaUCAU-GA-CGUGGGGGGUGAuua -5'
4041 5' -49.9 NC_001650.1 + 54666 0.66 0.997577
Target:  5'- ----cAGcACUGCAgCCCCCGCc--- -3'
miRNA:   3'- cauuaUCaUGACGUgGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 54843 0.69 0.968381
Target:  5'- gGUAcUGGguuCUGCA-CCCCCACUGGg -3'
miRNA:   3'- -CAUuAUCau-GACGUgGGGGGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 56451 0.69 0.97941
Target:  5'- cUGAUAGaggcuCUGCcucGCCCCUCGCUGAc -3'
miRNA:   3'- cAUUAUCau---GACG---UGGGGGGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 59762 0.69 0.97941
Target:  5'- ----gGGgGCgagGCGCCCCCCACg--- -3'
miRNA:   3'- cauuaUCaUGa--CGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 63142 0.66 0.995287
Target:  5'- ----cAGgACggGCGCCCCCCGCg--- -3'
miRNA:   3'- cauuaUCaUGa-CGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 71448 0.66 0.996588
Target:  5'- ----gAGUACgaGCAgcCCCCCCACa--- -3'
miRNA:   3'- cauuaUCAUGa-CGU--GGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 74950 0.71 0.934981
Target:  5'- -------aGCgggGCGCCCCCCACUAu- -3'
miRNA:   3'- cauuaucaUGa--CGUGGGGGGUGAUua -5'
4041 5' -49.9 NC_001650.1 + 76342 0.67 0.994244
Target:  5'- -aAAUGGUGCucuugaggucggcgUGCGCCCCCuCGCc--- -3'
miRNA:   3'- caUUAUCAUG--------------ACGUGGGGG-GUGauua -5'
4041 5' -49.9 NC_001650.1 + 77264 0.66 0.995287
Target:  5'- --cGUGGUgACcGCGCCCCCCAg---- -3'
miRNA:   3'- cauUAUCA-UGaCGUGGGGGGUgauua -5'
4041 5' -49.9 NC_001650.1 + 78830 0.69 0.968381
Target:  5'- ---cUGGUGCUGaGCCCCCC-CUGc- -3'
miRNA:   3'- cauuAUCAUGACgUGGGGGGuGAUua -5'
4041 5' -49.9 NC_001650.1 + 93486 0.66 0.995213
Target:  5'- uGUAcUGGUuuuacaacagcugGCUGCagACCCCCCugUAc- -3'
miRNA:   3'- -CAUuAUCA-------------UGACG--UGGGGGGugAUua -5'
4041 5' -49.9 NC_001650.1 + 106141 0.66 0.996588
Target:  5'- cGUGGUAGUuCUcGCACgCCCUACa--- -3'
miRNA:   3'- -CAUUAUCAuGA-CGUGgGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 110838 0.71 0.924052
Target:  5'- -aGGUAGUugUGCAUCUCCCugUc-- -3'
miRNA:   3'- caUUAUCAugACGUGGGGGGugAuua -5'
4041 5' -49.9 NC_001650.1 + 113048 0.7 0.953693
Target:  5'- aGUAggAGUACUGCAgCCUCCugUu-- -3'
miRNA:   3'- -CAUuaUCAUGACGUgGGGGGugAuua -5'
4041 5' -49.9 NC_001650.1 + 117399 0.78 0.625207
Target:  5'- -gAGUcaUACUGCACCCCCCACg--- -3'
miRNA:   3'- caUUAucAUGACGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 117469 0.67 0.992607
Target:  5'- -----cGUGCggcggaGCGCCCCCCACc--- -3'
miRNA:   3'- cauuauCAUGa-----CGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 124161 0.7 0.953693
Target:  5'- -cGAUGGgaACaGCGCCCCaCCACUAGa -3'
miRNA:   3'- caUUAUCa-UGaCGUGGGG-GGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 131979 0.67 0.9945
Target:  5'- --uGUGGaGCacGCugCCCCCGCUGGa -3'
miRNA:   3'- cauUAUCaUGa-CGugGGGGGUGAUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.