Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4041 | 5' | -49.9 | NC_001650.1 | + | 50499 | 0.71 | 0.940049 |
Target: 5'- ----gGGUGuCUgGCGCCCCCCGCUc-- -3' miRNA: 3'- cauuaUCAU-GA-CGUGGGGGGUGAuua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 49218 | 0.66 | 0.997577 |
Target: 5'- ---cUGGUGCU-CACCCCCCuGCg--- -3' miRNA: 3'- cauuAUCAUGAcGUGGGGGG-UGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 36621 | 0.71 | 0.944856 |
Target: 5'- uGUAGcGGUugUcCACCCCCCugUAGc -3' miRNA: 3'- -CAUUaUCAugAcGUGGGGGGugAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 34232 | 0.7 | 0.956546 |
Target: 5'- ----aAGUACUGCugCCaagauggauacuguCCCACUGGUg -3' miRNA: 3'- cauuaUCAUGACGugGG--------------GGGUGAUUA- -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 25091 | 0.66 | 0.995287 |
Target: 5'- cUGGUGGUGCUGCucguacagaGCCCaCCCAg---- -3' miRNA: 3'- cAUUAUCAUGACG---------UGGG-GGGUgauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 24641 | 0.67 | 0.9945 |
Target: 5'- uUGAUGGUGCUGU-CUCCUC-CUGAUa -3' miRNA: 3'- cAUUAUCAUGACGuGGGGGGuGAUUA- -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 19803 | 0.66 | 0.996588 |
Target: 5'- ---cUGGUAgaGCACgCCCCGCg--- -3' miRNA: 3'- cauuAUCAUgaCGUGgGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 17981 | 0.67 | 0.992607 |
Target: 5'- gGUGA-AGaAgaGCGCCCCCCACg--- -3' miRNA: 3'- -CAUUaUCaUgaCGUGGGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 2830 | 0.85 | 0.311768 |
Target: 5'- aGUAAUAGUACcGCACCCCCCcauCUAAa -3' miRNA: 3'- -CAUUAUCAUGaCGUGGGGGGu--GAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 2676 | 1.06 | 0.017149 |
Target: 5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3' miRNA: 3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 2541 | 0.86 | 0.255948 |
Target: 5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3' miRNA: 3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 2397 | 0.86 | 0.255948 |
Target: 5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3' miRNA: 3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 2253 | 0.95 | 0.078339 |
Target: 5'- aGUAAUAGUACUGCACCCCCCcacACUGAa -3' miRNA: 3'- -CAUUAUCAUGACGUGGGGGG---UGAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 2101 | 1.06 | 0.017149 |
Target: 5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3' miRNA: 3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 1949 | 1.06 | 0.016659 |
Target: 5'- aGUAAUAGUACUGCACCCCCCACUGAUc -3' miRNA: 3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 1817 | 1.06 | 0.016659 |
Target: 5'- aGUAAUAGUACUGCACCCCCCACUGAUc -3' miRNA: 3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 1682 | 0.9 | 0.147781 |
Target: 5'- aGUAAUAGUACcGCACCCCCCACUc-- -3' miRNA: 3'- -CAUUAUCAUGaCGUGGGGGGUGAuua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 1551 | 0.88 | 0.214067 |
Target: 5'- aGUAAUAGUACcGCACCCCCCACc--- -3' miRNA: 3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 1383 | 0.97 | 0.055803 |
Target: 5'- aGUAAUAGUACUGCAcCCCCCCACUGAc -3' miRNA: 3'- -CAUUAUCAUGACGU-GGGGGGUGAUUa -5' |
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4041 | 5' | -49.9 | NC_001650.1 | + | 1195 | 0.89 | 0.168986 |
Target: 5'- aGUAAUAGUACcGCACCCCCCACa--- -3' miRNA: 3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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