miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4041 5' -49.9 NC_001650.1 + 169104 0.86 0.255948
Target:  5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5'
4041 5' -49.9 NC_001650.1 + 1682 0.9 0.147781
Target:  5'- aGUAAUAGUACcGCACCCCCCACUc-- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGAuua -5'
4041 5' -49.9 NC_001650.1 + 168389 0.9 0.147781
Target:  5'- aGUAAUAGUACcGCACCCCCCACUc-- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGAuua -5'
4041 5' -49.9 NC_001650.1 + 1195 0.89 0.168986
Target:  5'- aGUAAUAGUACcGCACCCCCCACa--- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 167902 0.89 0.168986
Target:  5'- aGUAAUAGUACcGCACCCCCCACa--- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 1551 0.88 0.214067
Target:  5'- aGUAAUAGUACcGCACCCCCCACc--- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 168258 0.88 0.214067
Target:  5'- aGUAAUAGUACcGCACCCCCCACc--- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 2397 0.86 0.255948
Target:  5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5'
4041 5' -49.9 NC_001650.1 + 2541 0.86 0.255948
Target:  5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5'
4041 5' -49.9 NC_001650.1 + 168656 0.92 0.122161
Target:  5'- aGUAAUA-UACUGCACCCCCCACUGAUc -3'
miRNA:   3'- -CAUUAUcAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 168960 0.95 0.078339
Target:  5'- aGUAAUAGUACUGCACCCCCCcacACUGAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGG---UGAUUa -5'
4041 5' -49.9 NC_001650.1 + 2253 0.95 0.078339
Target:  5'- aGUAAUAGUACUGCACCCCCCcacACUGAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGG---UGAUUa -5'
4041 5' -49.9 NC_001650.1 + 1949 1.06 0.016659
Target:  5'- aGUAAUAGUACUGCACCCCCCACUGAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 168524 1.06 0.016659
Target:  5'- aGUAAUAGUACUGCACCCCCCACUGAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 2101 1.06 0.017149
Target:  5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 2676 1.06 0.017149
Target:  5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 168808 1.06 0.017149
Target:  5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 169383 1.06 0.017149
Target:  5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 1383 0.97 0.055803
Target:  5'- aGUAAUAGUACUGCAcCCCCCCACUGAc -3'
miRNA:   3'- -CAUUAUCAUGACGU-GGGGGGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 168090 0.97 0.055803
Target:  5'- aGUAAUAGUACUGCAcCCCCCCACUGAc -3'
miRNA:   3'- -CAUUAUCAUGACGU-GGGGGGUGAUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.