miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4041 5' -49.9 NC_001650.1 + 110838 0.71 0.924052
Target:  5'- -aGGUAGUugUGCAUCUCCCugUc-- -3'
miRNA:   3'- caUUAUCAugACGUGGGGGGugAuua -5'
4041 5' -49.9 NC_001650.1 + 154805 0.66 0.995287
Target:  5'- ------cUGCUGCACCCUCCucCUGAc -3'
miRNA:   3'- cauuaucAUGACGUGGGGGGu-GAUUa -5'
4041 5' -49.9 NC_001650.1 + 19803 0.66 0.996588
Target:  5'- ---cUGGUAgaGCACgCCCCGCg--- -3'
miRNA:   3'- cauuAUCAUgaCGUGgGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 54666 0.66 0.997577
Target:  5'- ----cAGcACUGCAgCCCCCGCc--- -3'
miRNA:   3'- cauuaUCaUGACGUgGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 161587 0.7 0.949403
Target:  5'- -----cGUAC-GCGCCCCCCGCg--- -3'
miRNA:   3'- cauuauCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 113048 0.7 0.953693
Target:  5'- aGUAggAGUACUGCAgCCUCCugUu-- -3'
miRNA:   3'- -CAUuaUCAUGACGUgGGGGGugAuua -5'
4041 5' -49.9 NC_001650.1 + 160738 0.7 0.961522
Target:  5'- ----gGGcGCUGCACaCCCCGCUGAc -3'
miRNA:   3'- cauuaUCaUGACGUGgGGGGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 153197 0.69 0.974324
Target:  5'- -aAGUGGgaggGCGCCCCCCGCc--- -3'
miRNA:   3'- caUUAUCaugaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 76342 0.67 0.994244
Target:  5'- -aAAUGGUGCucuugaggucggcgUGCGCCCCCuCGCc--- -3'
miRNA:   3'- caUUAUCAUG--------------ACGUGGGGG-GUGauua -5'
4041 5' -49.9 NC_001650.1 + 25091 0.66 0.995287
Target:  5'- cUGGUGGUGCUGCucguacagaGCCCaCCCAg---- -3'
miRNA:   3'- cAUUAUCAUGACG---------UGGG-GGGUgauua -5'
4041 5' -49.9 NC_001650.1 + 156993 0.67 0.992607
Target:  5'- --uAUGGUgagGCUGCagucgcccGCCCCCCugUGGc -3'
miRNA:   3'- cauUAUCA---UGACG--------UGGGGGGugAUUa -5'
4041 5' -49.9 NC_001650.1 + 74950 0.71 0.934981
Target:  5'- -------aGCgggGCGCCCCCCACUAu- -3'
miRNA:   3'- cauuaucaUGa--CGUGGGGGGUGAUua -5'
4041 5' -49.9 NC_001650.1 + 63142 0.66 0.995287
Target:  5'- ----cAGgACggGCGCCCCCCGCg--- -3'
miRNA:   3'- cauuaUCaUGa-CGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 50499 0.71 0.940049
Target:  5'- ----gGGUGuCUgGCGCCCCCCGCUc-- -3'
miRNA:   3'- cauuaUCAU-GA-CGUGGGGGGUGAuua -5'
4041 5' -49.9 NC_001650.1 + 162836 0.67 0.991483
Target:  5'- cGUAGaAGUACacagucgcGCGCCCCCCuCUGGc -3'
miRNA:   3'- -CAUUaUCAUGa-------CGUGGGGGGuGAUUa -5'
4041 5' -49.9 NC_001650.1 + 77264 0.66 0.995287
Target:  5'- --cGUGGUgACcGCGCCCCCCAg---- -3'
miRNA:   3'- cauUAUCA-UGaCGUGGGGGGUgauua -5'
4041 5' -49.9 NC_001650.1 + 106141 0.66 0.996588
Target:  5'- cGUGGUAGUuCUcGCACgCCCUACa--- -3'
miRNA:   3'- -CAUUAUCAuGA-CGUGgGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 36621 0.71 0.944856
Target:  5'- uGUAGcGGUugUcCACCCCCCugUAGc -3'
miRNA:   3'- -CAUUaUCAugAcGUGGGGGGugAUUa -5'
4041 5' -49.9 NC_001650.1 + 34232 0.7 0.956546
Target:  5'- ----aAGUACUGCugCCaagauggauacuguCCCACUGGUg -3'
miRNA:   3'- cauuaUCAUGACGugGG--------------GGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 24641 0.67 0.9945
Target:  5'- uUGAUGGUGCUGU-CUCCUC-CUGAUa -3'
miRNA:   3'- cAUUAUCAUGACGuGGGGGGuGAUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.