miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4041 5' -49.9 NC_001650.1 + 169383 1.06 0.017149
Target:  5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 168808 1.06 0.017149
Target:  5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 2676 1.06 0.017149
Target:  5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 2101 1.06 0.017149
Target:  5'- aGUAAUAGUACUGCACCCCCCACUAAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 168524 1.06 0.016659
Target:  5'- aGUAAUAGUACUGCACCCCCCACUGAUc -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGGUGAUUA- -5'
4041 5' -49.9 NC_001650.1 + 167902 0.89 0.168986
Target:  5'- aGUAAUAGUACcGCACCCCCCACa--- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 1551 0.88 0.214067
Target:  5'- aGUAAUAGUACcGCACCCCCCACc--- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 168258 0.88 0.214067
Target:  5'- aGUAAUAGUACcGCACCCCCCACc--- -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 124161 0.7 0.953693
Target:  5'- -cGAUGGgaACaGCGCCCCaCCACUAGa -3'
miRNA:   3'- caUUAUCa-UGaCGUGGGG-GGUGAUUa -5'
4041 5' -49.9 NC_001650.1 + 167533 0.77 0.700153
Target:  5'- aUAAUAGUACcGCACCCCCC-Cg--- -3'
miRNA:   3'- cAUUAUCAUGaCGUGGGGGGuGauua -5'
4041 5' -49.9 NC_001650.1 + 826 0.77 0.700153
Target:  5'- aUAAUAGUACcGCACCCCCC-Cg--- -3'
miRNA:   3'- cAUUAUCAUGaCGUGGGGGGuGauua -5'
4041 5' -49.9 NC_001650.1 + 117399 0.78 0.625207
Target:  5'- -gAGUcaUACUGCACCCCCCACg--- -3'
miRNA:   3'- caUUAucAUGACGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 169537 0.85 0.311768
Target:  5'- aGUAAUAGUACcGCACCCCCCcauCUAAa -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGu--GAUUa -5'
4041 5' -49.9 NC_001650.1 + 2830 0.85 0.311768
Target:  5'- aGUAAUAGUACcGCACCCCCCcauCUAAa -3'
miRNA:   3'- -CAUUAUCAUGaCGUGGGGGGu--GAUUa -5'
4041 5' -49.9 NC_001650.1 + 167719 0.86 0.255948
Target:  5'- aUAAUAGUACcGCACCCCCCACa--- -3'
miRNA:   3'- cAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 1012 0.86 0.255948
Target:  5'- aUAAUAGUACcGCACCCCCCACa--- -3'
miRNA:   3'- cAUUAUCAUGaCGUGGGGGGUGauua -5'
4041 5' -49.9 NC_001650.1 + 169248 0.86 0.255948
Target:  5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5'
4041 5' -49.9 NC_001650.1 + 169104 0.86 0.255948
Target:  5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5'
4041 5' -49.9 NC_001650.1 + 2541 0.86 0.255948
Target:  5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5'
4041 5' -49.9 NC_001650.1 + 2397 0.86 0.255948
Target:  5'- aGUAAUAGUACUGCACCCCCacuccCUAAa -3'
miRNA:   3'- -CAUUAUCAUGACGUGGGGGgu---GAUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.