Results 21 - 40 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4042 | 3' | -56.5 | NC_001650.1 | + | 619 | 0.66 | 0.915313 |
Target: 5'- cGCCCuCCCC-C-GGGCCcCcAUUGGUc -3' miRNA: 3'- -CGGGuGGGGaGaUCCGGaGaUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 130439 | 0.66 | 0.915313 |
Target: 5'- aGUCCgACCCCUaCUcGGCCacgcgcgagagUCUGgucUGGCu -3' miRNA: 3'- -CGGG-UGGGGA-GAuCCGG-----------AGAUa--ACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 148000 | 0.66 | 0.909456 |
Target: 5'- cGCCCGCCCC-CUgagGGGUCcCg--UGGg -3' miRNA: 3'- -CGGGUGGGGaGA---UCCGGaGauaACCg -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 111497 | 0.66 | 0.909456 |
Target: 5'- cGUCUGCCCCaccagCUuGGcCCUCUcgUGGg -3' miRNA: 3'- -CGGGUGGGGa----GAuCC-GGAGAuaACCg -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 54254 | 0.66 | 0.909456 |
Target: 5'- gGCCCGCgCCacgGGcGCCUCcAggGGCg -3' miRNA: 3'- -CGGGUGgGGagaUC-CGGAGaUaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 52838 | 0.66 | 0.908858 |
Target: 5'- cGCCCugCCCgccCUGGGagcgggcgcgccuCCUCUcgUaGCa -3' miRNA: 3'- -CGGGugGGGa--GAUCC-------------GGAGAuaAcCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 111320 | 0.66 | 0.908257 |
Target: 5'- uGCCCACCCUUUccccuggAGGCC-CUGcccauccugagGGCc -3' miRNA: 3'- -CGGGUGGGGAGa------UCCGGaGAUaa---------CCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 105238 | 0.66 | 0.90337 |
Target: 5'- uCCC-CCCCUCUcccucgcucucuGGGCCgCgg--GGCa -3' miRNA: 3'- cGGGuGGGGAGA------------UCCGGaGauaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 108802 | 0.66 | 0.90337 |
Target: 5'- cGCCCGCCCCcCUgagcuagaucGGGUCUCgcccccaGCg -3' miRNA: 3'- -CGGGUGGGGaGA----------UCCGGAGauaac--CG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 49503 | 0.66 | 0.90337 |
Target: 5'- gGUCCGCCUCUgcAGccGCCUCUGg-GGCa -3' miRNA: 3'- -CGGGUGGGGAgaUC--CGGAGAUaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 101036 | 0.66 | 0.90337 |
Target: 5'- gGCgCGCUCCUUguuuuuGGUCUCUAU-GGUg -3' miRNA: 3'- -CGgGUGGGGAGau----CCGGAGAUAaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 156126 | 0.66 | 0.90337 |
Target: 5'- aGCaCCGCCCCgg-GGGUCUCUGa---- -3' miRNA: 3'- -CG-GGUGGGGagaUCCGGAGAUaaccg -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 135850 | 0.66 | 0.902748 |
Target: 5'- cCCCGUCCCUCaGGGCCUUgagaaagcucaggUcgUGGUc -3' miRNA: 3'- cGGGUGGGGAGaUCCGGAG-------------AuaACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 61990 | 0.66 | 0.897056 |
Target: 5'- cCUCGCCCCc---GGCCUCg---GGCa -3' miRNA: 3'- cGGGUGGGGagauCCGGAGauaaCCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 54906 | 0.66 | 0.897056 |
Target: 5'- aGCCC-CCggCUCgcGGCCUCgcucgGGCg -3' miRNA: 3'- -CGGGuGGg-GAGauCCGGAGauaa-CCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 132110 | 0.66 | 0.895766 |
Target: 5'- cCCUACCCCUacGGGCCgcccaccGGCa -3' miRNA: 3'- cGGGUGGGGAgaUCCGGagauaa-CCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 5831 | 0.67 | 0.890517 |
Target: 5'- gGCagGCCCC-CUAGGCCcCcAUUGGg -3' miRNA: 3'- -CGggUGGGGaGAUCCGGaGaUAACCg -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 173604 | 0.67 | 0.890517 |
Target: 5'- aGUCUGCCCagcaaccaGGGUCUUUAUUGGCc -3' miRNA: 3'- -CGGGUGGGgaga----UCCGGAGAUAACCG- -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 172538 | 0.67 | 0.890517 |
Target: 5'- gGCagGCCCC-CUAGGCCcCcAUUGGg -3' miRNA: 3'- -CGggUGGGGaGAUCCGGaGaUAACCg -5' |
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4042 | 3' | -56.5 | NC_001650.1 | + | 52843 | 0.67 | 0.890517 |
Target: 5'- aGCuCCACCCC-Ca--GCCUCU--UGGCc -3' miRNA: 3'- -CG-GGUGGGGaGaucCGGAGAuaACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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