miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4042 5' -55.4 NC_001650.1 + 129974 0.69 0.832248
Target:  5'- -cGCCCGUGgcgcgggcccuGAGGcuGCUGaggGCGGCGCg -3'
miRNA:   3'- caCGGGUAU-----------UUCC--CGACa--CGCUGCGg -5'
4042 5' -55.4 NC_001650.1 + 60092 0.7 0.779363
Target:  5'- gGUGCCCGccGAGGGuCUGgccCGAccCGCCg -3'
miRNA:   3'- -CACGGGUauUUCCC-GACac-GCU--GCGG- -5'
4042 5' -55.4 NC_001650.1 + 2051 0.7 0.779363
Target:  5'- gGUaCCCAUGAAGGGUUGUGCaauACuCCu -3'
miRNA:   3'- -CAcGGGUAUUUCCCGACACGc--UGcGG- -5'
4042 5' -55.4 NC_001650.1 + 168758 0.7 0.779363
Target:  5'- gGUaCCCAUGAAGGGUUGUGCaauACuCCu -3'
miRNA:   3'- -CAcGGGUAUUUCCCGACACGc--UGcGG- -5'
4042 5' -55.4 NC_001650.1 + 131547 0.69 0.806514
Target:  5'- -cGCCCG---GGGGCUGgacGCGGgGCg -3'
miRNA:   3'- caCGGGUauuUCCCGACa--CGCUgCGg -5'
4042 5' -55.4 NC_001650.1 + 157264 0.69 0.81526
Target:  5'- -cGCCCccucGGGGCUGUaGCccauGCGCCu -3'
miRNA:   3'- caCGGGuauuUCCCGACA-CGc---UGCGG- -5'
4042 5' -55.4 NC_001650.1 + 89854 0.69 0.823841
Target:  5'- cGUGCCCG--GAGaGGCgGUGCGG-GUCg -3'
miRNA:   3'- -CACGGGUauUUC-CCGaCACGCUgCGG- -5'
4042 5' -55.4 NC_001650.1 + 132181 0.69 0.832248
Target:  5'- gGUGCCCGUGAccggguucgaGGuGGCcGUGgGGUGCCu -3'
miRNA:   3'- -CACGGGUAUU----------UC-CCGaCACgCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 165529 0.69 0.832248
Target:  5'- uUGCCUcaAGAGGGCUGUugaGCGGgcaGCUg -3'
miRNA:   3'- cACGGGuaUUUCCCGACA---CGCUg--CGG- -5'
4042 5' -55.4 NC_001650.1 + 109177 0.71 0.744273
Target:  5'- -gGCCCgaGUGGgacgagccguacgcGGGGCggcccuucugcacGUGCGACGCCa -3'
miRNA:   3'- caCGGG--UAUU--------------UCCCGa------------CACGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 127019 0.71 0.721757
Target:  5'- -aGCCCG--GGGGGCaGUGCGAgGgCg -3'
miRNA:   3'- caCGGGUauUUCCCGaCACGCUgCgG- -5'
4042 5' -55.4 NC_001650.1 + 158126 0.72 0.63996
Target:  5'- -gGCCCAUGGAGGuugcuucGCUGUGCaGAugggugacCGCCu -3'
miRNA:   3'- caCGGGUAUUUCC-------CGACACG-CU--------GCGG- -5'
4042 5' -55.4 NC_001650.1 + 169487 1.11 0.002758
Target:  5'- aGUGCCCAUAAAGGGCUGUGCGACGCCc -3'
miRNA:   3'- -CACGGGUAUUUCCCGACACGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 26735 0.88 0.08285
Target:  5'- -gGCCCGgccugGAGGGGCUGUGCGcCGCCu -3'
miRNA:   3'- caCGGGUa----UUUCCCGACACGCuGCGG- -5'
4042 5' -55.4 NC_001650.1 + 26954 0.82 0.209473
Target:  5'- cGUGCgCGU--GGGGgaGUGCGACGCCu -3'
miRNA:   3'- -CACGgGUAuuUCCCgaCACGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 22578 0.8 0.266778
Target:  5'- -cGCCCGUccGGGGCg--GCGGCGCCu -3'
miRNA:   3'- caCGGGUAuuUCCCGacaCGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 121305 0.8 0.273158
Target:  5'- -cGCCCGagaUAGAGGGC-GUGCG-CGCCg -3'
miRNA:   3'- caCGGGU---AUUUCCCGaCACGCuGCGG- -5'
4042 5' -55.4 NC_001650.1 + 111069 0.74 0.579849
Target:  5'- -gGCCCuaccccAGGGGCUccaGCGGCGCCa -3'
miRNA:   3'- caCGGGuau---UUCCCGAca-CGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 51162 0.73 0.610343
Target:  5'- aGUGCCCGc--GGGGCaG-GCGGCGCg -3'
miRNA:   3'- -CACGGGUauuUCCCGaCaCGCUGCGg -5'
4042 5' -55.4 NC_001650.1 + 78589 0.73 0.630765
Target:  5'- aUGUCCAccucggcaacUGGAGG-CUGUGCGgGCGCCg -3'
miRNA:   3'- cACGGGU----------AUUUCCcGACACGC-UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.