miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4043 3' -51.9 NC_001650.1 + 49889 0.66 0.991068
Target:  5'- cACGGAGggCCCCGggggGcGCCGGggGg- -3'
miRNA:   3'- cUGUCUCa-GGGGUa---CaCGGUCuuUac -5'
4043 3' -51.9 NC_001650.1 + 23429 0.66 0.991068
Target:  5'- gGACcugGGAGaccCCCCAgGUGCCGGAu--- -3'
miRNA:   3'- -CUG---UCUCa--GGGGUaCACGGUCUuuac -5'
4043 3' -51.9 NC_001650.1 + 111242 0.66 0.988389
Target:  5'- aGGCAGAugcugCCCCAgg-GCCAGAAu-- -3'
miRNA:   3'- -CUGUCUca---GGGGUacaCGGUCUUuac -5'
4043 3' -51.9 NC_001650.1 + 67193 0.66 0.986835
Target:  5'- cGGCGGccaGGUCCCCGuuUGUGgaCCAGAGc-- -3'
miRNA:   3'- -CUGUC---UCAGGGGU--ACAC--GGUCUUuac -5'
4043 3' -51.9 NC_001650.1 + 4348 0.66 0.985126
Target:  5'- -cCGGc-UCCCCAUugGCCAGAGAUGa -3'
miRNA:   3'- cuGUCucAGGGGUAcaCGGUCUUUAC- -5'
4043 3' -51.9 NC_001650.1 + 171055 0.66 0.985126
Target:  5'- -cCGGc-UCCCCAUugGCCAGAGAUGa -3'
miRNA:   3'- cuGUCucAGGGGUAcaCGGUCUUUAC- -5'
4043 3' -51.9 NC_001650.1 + 115330 0.67 0.981207
Target:  5'- aGACAGGGUCUCCAUccUGCUguaGGAGAc- -3'
miRNA:   3'- -CUGUCUCAGGGGUAc-ACGG---UCUUUac -5'
4043 3' -51.9 NC_001650.1 + 100230 0.67 0.976561
Target:  5'- uGCGGGuUCCCCGUGUG--GGGAGUGg -3'
miRNA:   3'- cUGUCUcAGGGGUACACggUCUUUAC- -5'
4043 3' -51.9 NC_001650.1 + 58979 0.68 0.971124
Target:  5'- uGugGGAGUUCaCAUcgccGUGCCAGAGAUu -3'
miRNA:   3'- -CugUCUCAGGgGUA----CACGGUCUUUAc -5'
4043 3' -51.9 NC_001650.1 + 42402 0.68 0.971124
Target:  5'- uGGCAGAGUUCUC---UGCCAGAaccagGAUGg -3'
miRNA:   3'- -CUGUCUCAGGGGuacACGGUCU-----UUAC- -5'
4043 3' -51.9 NC_001650.1 + 28096 0.69 0.949506
Target:  5'- -uCAGAGacCCCCGgggcgGUGCUGGAGGUGc -3'
miRNA:   3'- cuGUCUCa-GGGGUa----CACGGUCUUUAC- -5'
4043 3' -51.9 NC_001650.1 + 95700 0.69 0.94039
Target:  5'- uGACAGGGacuUCCCCuuUG-GCCGGAGggGg -3'
miRNA:   3'- -CUGUCUC---AGGGGu-ACaCGGUCUUuaC- -5'
4043 3' -51.9 NC_001650.1 + 67341 0.69 0.935458
Target:  5'- -uCGGcGGUCCCCAUGaggacgGCCAGGGAc- -3'
miRNA:   3'- cuGUC-UCAGGGGUACa-----CGGUCUUUac -5'
4043 3' -51.9 NC_001650.1 + 134262 0.69 0.935458
Target:  5'- uGAuCAGGGUCCCCGaGuUGUCAGAAu-- -3'
miRNA:   3'- -CU-GUCUCAGGGGUaC-ACGGUCUUuac -5'
4043 3' -51.9 NC_001650.1 + 175263 0.7 0.91915
Target:  5'- gGAUAGAG-CCCCAgcccugcgggGUGCCGGGGu-- -3'
miRNA:   3'- -CUGUCUCaGGGGUa---------CACGGUCUUuac -5'
4043 3' -51.9 NC_001650.1 + 8556 0.7 0.91915
Target:  5'- gGAUAGAG-CCCCAgcccugcgggGUGCCGGGGu-- -3'
miRNA:   3'- -CUGUCUCaGGGGUa---------CACGGUCUUuac -5'
4043 3' -51.9 NC_001650.1 + 124206 0.7 0.90058
Target:  5'- aGCGGAGUCCgCCAaagaggUGgGCCAGAAGcUGg -3'
miRNA:   3'- cUGUCUCAGG-GGU------ACaCGGUCUUU-AC- -5'
4043 3' -51.9 NC_001650.1 + 152564 0.71 0.893895
Target:  5'- gGACAGGGgCCCCGUGaugagGCggUAGAAGUGa -3'
miRNA:   3'- -CUGUCUCaGGGGUACa----CG--GUCUUUAC- -5'
4043 3' -51.9 NC_001650.1 + 5384 0.72 0.848876
Target:  5'- --gAGGGUCCUCAugggugUGUGCCAGggGg- -3'
miRNA:   3'- cugUCUCAGGGGU------ACACGGUCuuUac -5'
4043 3' -51.9 NC_001650.1 + 172091 0.72 0.848876
Target:  5'- --gAGGGUCCUCAugggugUGUGCCAGggGg- -3'
miRNA:   3'- cugUCUCAGGGGU------ACACGGUCuuUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.