miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4043 5' -60.1 NC_001650.1 + 42968 0.66 0.793714
Target:  5'- cGCCgcgggGCCgaGGGCGaaccGGGGGACCccggGCUc -3'
miRNA:   3'- cCGGa----CGG--UCCGUa---CCCCUUGGa---CGG- -5'
4043 5' -60.1 NC_001650.1 + 155398 0.66 0.788444
Target:  5'- uGGCCaGCuCggucacagacucccuGGGCAcguUGGGGAACaccgggagCUGCCu -3'
miRNA:   3'- -CCGGaCG-G---------------UCCGU---ACCCCUUG--------GACGG- -5'
4043 5' -60.1 NC_001650.1 + 92435 0.66 0.784904
Target:  5'- aGCCcgGUCGGGCuUGGagacgaaaagaGGAACCaGCCc -3'
miRNA:   3'- cCGGa-CGGUCCGuACC-----------CCUUGGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 138854 0.66 0.784904
Target:  5'- gGGCUggGCCGGGUuggguuuGGGAACCgaGCUc -3'
miRNA:   3'- -CCGGa-CGGUCCGuac----CCCUUGGa-CGG- -5'
4043 5' -60.1 NC_001650.1 + 68810 0.66 0.784904
Target:  5'- aGGCCgggGCCcucgcucgagGGGCggGGcgccucggacGGGACgUGCCg -3'
miRNA:   3'- -CCGGa--CGG----------UCCGuaCC----------CCUUGgACGG- -5'
4043 5' -60.1 NC_001650.1 + 139660 0.66 0.784904
Target:  5'- cGGCaaGCCA-GUAUGGGGuuucaguGCCUGguCCa -3'
miRNA:   3'- -CCGgaCGGUcCGUACCCCu------UGGAC--GG- -5'
4043 5' -60.1 NC_001650.1 + 22491 0.66 0.784904
Target:  5'- cGCC-GCCcGGCAUGGGc--CCcGCCu -3'
miRNA:   3'- cCGGaCGGuCCGUACCCcuuGGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 82418 0.66 0.784016
Target:  5'- aGCCcGCCAacuGGCA-GGGGAcgGCCguggaggacccccUGCCc -3'
miRNA:   3'- cCGGaCGGU---CCGUaCCCCU--UGG-------------ACGG- -5'
4043 5' -60.1 NC_001650.1 + 172028 0.66 0.775967
Target:  5'- uGG-CUGUgGGGCggccacgugGUGGGGAGgCgGCCa -3'
miRNA:   3'- -CCgGACGgUCCG---------UACCCCUUgGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 147674 0.66 0.775967
Target:  5'- cGGCCgggaGCC--GCucUGGGGGguACCUGCUc -3'
miRNA:   3'- -CCGGa---CGGucCGu-ACCCCU--UGGACGG- -5'
4043 5' -60.1 NC_001650.1 + 156804 0.66 0.775967
Target:  5'- aGGCCaggacgugGCCGGGCAccGGGcgUCUGgCa -3'
miRNA:   3'- -CCGGa-------CGGUCCGUacCCCuuGGACgG- -5'
4043 5' -60.1 NC_001650.1 + 155782 0.66 0.775967
Target:  5'- cGGCC-GCCcccacccgccGCccGGGGGACCUGUa -3'
miRNA:   3'- -CCGGaCGGuc--------CGuaCCCCUUGGACGg -5'
4043 5' -60.1 NC_001650.1 + 96844 0.66 0.775967
Target:  5'- uGGCCUGUCcccCGUGauaGGGGuCCUGCCc -3'
miRNA:   3'- -CCGGACGGuccGUAC---CCCUuGGACGG- -5'
4043 5' -60.1 NC_001650.1 + 31525 0.66 0.775967
Target:  5'- uGUCgGUCuGGgAUGGGcGGACCUGaCCg -3'
miRNA:   3'- cCGGaCGGuCCgUACCC-CUUGGAC-GG- -5'
4043 5' -60.1 NC_001650.1 + 5321 0.66 0.775967
Target:  5'- uGG-CUGUgGGGCggccacgugGUGGGGAGgCgGCCa -3'
miRNA:   3'- -CCgGACGgUCCG---------UACCCCUUgGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 2749 0.66 0.775967
Target:  5'- aGGCCUcuauugGCCagagGGGuCAUGGGGGAg-UGCCc -3'
miRNA:   3'- -CCGGA------CGG----UCC-GUACCCCUUggACGG- -5'
4043 5' -60.1 NC_001650.1 + 169456 0.66 0.775967
Target:  5'- aGGCCUcuauugGCCagagGGGuCAUGGGGGAg-UGCCc -3'
miRNA:   3'- -CCGGA------CGG----UCC-GUACCCCUUggACGG- -5'
4043 5' -60.1 NC_001650.1 + 138245 0.66 0.775967
Target:  5'- cGGCCaaucgGCgCGcGGCugagaGGGGAACUgGCCa -3'
miRNA:   3'- -CCGGa----CG-GU-CCGua---CCCCUUGGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 122886 0.66 0.76691
Target:  5'- gGGCaUGCUgaGGGCGgagcUGGGcAACCUGUCc -3'
miRNA:   3'- -CCGgACGG--UCCGU----ACCCcUUGGACGG- -5'
4043 5' -60.1 NC_001650.1 + 135862 0.66 0.765998
Target:  5'- gGGCCUugagaaaGCuCAGGuCGUggucggagaGGGGGGCCUcuGCCc -3'
miRNA:   3'- -CCGGA-------CG-GUCC-GUA---------CCCCUUGGA--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.