miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4043 5' -60.1 NC_001650.1 + 169534 0.66 0.76417
Target:  5'- cGCCcGCCGGGUccggguccgcgaggAgggGGGGAgagagGCCgGCCg -3'
miRNA:   3'- cCGGaCGGUCCG--------------Ua--CCCCU-----UGGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 2827 0.66 0.76417
Target:  5'- cGCCcGCCGGGUccggguccgcgaggAgggGGGGAgagagGCCgGCCg -3'
miRNA:   3'- cCGGaCGGUCCG--------------Ua--CCCCU-----UGGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 26730 0.66 0.757741
Target:  5'- cGCCggGCCcGGCcUGGaGGGGCUgugcGCCg -3'
miRNA:   3'- cCGGa-CGGuCCGuACC-CCUUGGa---CGG- -5'
4043 5' -60.1 NC_001650.1 + 132403 0.66 0.756818
Target:  5'- cGGCCUgGCCGGGCgcgaggagGUGGaGGucuucgggaggcaGGCC-GCCu -3'
miRNA:   3'- -CCGGA-CGGUCCG--------UACC-CC-------------UUGGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 157137 0.66 0.755894
Target:  5'- cGCCUggGCCAGGCugguguaGUGGGccucgaaGAgguACCUGCUc -3'
miRNA:   3'- cCGGA--CGGUCCG-------UACCC-------CU---UGGACGG- -5'
4043 5' -60.1 NC_001650.1 + 130019 0.66 0.754044
Target:  5'- aGGCCgcggGCCucaaGGGCcagaucgacgagGGGGAGCggGCCu -3'
miRNA:   3'- -CCGGa---CGG----UCCGua----------CCCCUUGgaCGG- -5'
4043 5' -60.1 NC_001650.1 + 160801 0.66 0.752189
Target:  5'- gGGUCUcCCAGGUccagggcuccaucgaGgaaGGGGGGCCcGCCg -3'
miRNA:   3'- -CCGGAcGGUCCG---------------Ua--CCCCUUGGaCGG- -5'
4043 5' -60.1 NC_001650.1 + 39640 0.66 0.7494
Target:  5'- gGGaCCcggGCCAGGCGguagcucugcugaggGcGGGGugUUGCCu -3'
miRNA:   3'- -CC-GGa--CGGUCCGUa--------------C-CCCUugGACGG- -5'
4043 5' -60.1 NC_001650.1 + 16292 0.66 0.7494
Target:  5'- aGGCggUUGCCAGGCAgauuagguuaaugugGGGGGugCgGUa -3'
miRNA:   3'- -CCG--GACGGUCCGUa--------------CCCCUugGaCGg -5'
4043 5' -60.1 NC_001650.1 + 182999 0.66 0.7494
Target:  5'- aGGCggUUGCCAGGCAgauuagguuaaugugGGGGGugCgGUa -3'
miRNA:   3'- -CCG--GACGGUCCGUa--------------CCCCUugGaCGg -5'
4043 5' -60.1 NC_001650.1 + 60626 0.66 0.748468
Target:  5'- cGcCCUGCCGGuuGaGGGGGGCCaccgucuccagcUGCCu -3'
miRNA:   3'- cC-GGACGGUCcgUaCCCCUUGG------------ACGG- -5'
4043 5' -60.1 NC_001650.1 + 49639 0.66 0.748468
Target:  5'- cGCCccucuacaaCCAGGCcUGGGGGuggGCCUuGCCc -3'
miRNA:   3'- cCGGac-------GGUCCGuACCCCU---UGGA-CGG- -5'
4043 5' -60.1 NC_001650.1 + 120547 0.66 0.748468
Target:  5'- -aCCUGCaGGGCgcgGUGGGGcuucuGACCUcgGCCg -3'
miRNA:   3'- ccGGACGgUCCG---UACCCC-----UUGGA--CGG- -5'
4043 5' -60.1 NC_001650.1 + 51572 0.66 0.748468
Target:  5'- cGCC-GCCAcucuggacuugGGgAUGGGGGaggccGCCUGCa -3'
miRNA:   3'- cCGGaCGGU-----------CCgUACCCCU-----UGGACGg -5'
4043 5' -60.1 NC_001650.1 + 122555 0.66 0.745668
Target:  5'- aGGCCUGCCAGGaccugcagagguucUAUGcGGcGuGCCUGg- -3'
miRNA:   3'- -CCGGACGGUCC--------------GUAC-CC-CuUGGACgg -5'
4043 5' -60.1 NC_001650.1 + 42560 0.67 0.739101
Target:  5'- gGGCCU-CgGGGCcUGGGGGugUuuUGCUu -3'
miRNA:   3'- -CCGGAcGgUCCGuACCCCUugG--ACGG- -5'
4043 5' -60.1 NC_001650.1 + 31014 0.67 0.739101
Target:  5'- gGGCCUGgCugGGGCggGGGGcGCCcucCCa -3'
miRNA:   3'- -CCGGACgG--UCCGuaCCCCuUGGac-GG- -5'
4043 5' -60.1 NC_001650.1 + 109621 0.67 0.739101
Target:  5'- cGCCUgaGCCAgGGCGUGGGGcAUCa-CCa -3'
miRNA:   3'- cCGGA--CGGU-CCGUACCCCuUGGacGG- -5'
4043 5' -60.1 NC_001650.1 + 38506 0.67 0.739101
Target:  5'- uGCCaccuccugUGCCAguucuacguGGCGggcGGGGAGcucuCCUGCCa -3'
miRNA:   3'- cCGG--------ACGGU---------CCGUa--CCCCUU----GGACGG- -5'
4043 5' -60.1 NC_001650.1 + 25023 0.67 0.736273
Target:  5'- uGGCCUcggGCCAGGCGgccucgauguucuacGGGAGCgacgugGCCa -3'
miRNA:   3'- -CCGGA---CGGUCCGUac-------------CCCUUGga----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.