miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4045 3' -54 NC_001650.1 + 30667 0.66 0.980515
Target:  5'- aCCUGGgggcggacgcgcgCgCCGcgGGGCgagcgGGAGGGGGg -3'
miRNA:   3'- -GGAUUaa-----------GgGGUaaCCCG-----UCUCCCCC- -5'
4045 3' -54 NC_001650.1 + 183657 0.66 0.97987
Target:  5'- cUCUGA-UCCCCGggaccaaugggagaGGGCgcugGGAGGGGa -3'
miRNA:   3'- -GGAUUaAGGGGUaa------------CCCG----UCUCCCCc -5'
4045 3' -54 NC_001650.1 + 52320 0.66 0.979652
Target:  5'- cCCUGGcccgcccgUCCUCcUUGGGagggaAGAGGGGc -3'
miRNA:   3'- -GGAUUa-------AGGGGuAACCCg----UCUCCCCc -5'
4045 3' -54 NC_001650.1 + 105373 0.66 0.979652
Target:  5'- aCCUcccgUCCCCGUccGcGaGCAGGGGGaGGc -3'
miRNA:   3'- -GGAuua-AGGGGUAa-C-C-CGUCUCCC-CC- -5'
4045 3' -54 NC_001650.1 + 16951 0.66 0.978307
Target:  5'- cUCUGA-UCCCCGggacaaugggagaGGGCgcugGGAGGGGa -3'
miRNA:   3'- -GGAUUaAGGGGUaa-----------CCCG----UCUCCCCc -5'
4045 3' -54 NC_001650.1 + 15890 0.66 0.977609
Target:  5'- -----aUCCCCucucggccaauggGGGUAGGGGGGu -3'
miRNA:   3'- ggauuaAGGGGuaa----------CCCGUCUCCCCc -5'
4045 3' -54 NC_001650.1 + 182597 0.66 0.977609
Target:  5'- -----aUCCCCucucggccaauggGGGUAGGGGGGu -3'
miRNA:   3'- ggauuaAGGGGuaa----------CCCGUCUCCCCc -5'
4045 3' -54 NC_001650.1 + 42505 0.66 0.977373
Target:  5'- -----cUCCCCAguguguUUGGGCAGGuGGGc -3'
miRNA:   3'- ggauuaAGGGGU------AACCCGUCUcCCCc -5'
4045 3' -54 NC_001650.1 + 112517 0.66 0.977373
Target:  5'- uCCUGAaa-CCCGgcggGGGCcagGGAcuGGGGGa -3'
miRNA:   3'- -GGAUUaagGGGUaa--CCCG---UCU--CCCCC- -5'
4045 3' -54 NC_001650.1 + 18773 0.66 0.976655
Target:  5'- gCCUuccUCCCCuccccGGGCAGGGuuacaaaaaaaagaGGGGc -3'
miRNA:   3'- -GGAuuaAGGGGuaa--CCCGUCUC--------------CCCC- -5'
4045 3' -54 NC_001650.1 + 2819 0.66 0.974912
Target:  5'- aCCUcGcUCgCCCGccGGGUccggguccgcgaGGAGGGGGg -3'
miRNA:   3'- -GGAuUaAG-GGGUaaCCCG------------UCUCCCCC- -5'
4045 3' -54 NC_001650.1 + 169526 0.66 0.974912
Target:  5'- aCCUcGcUCgCCCGccGGGUccggguccgcgaGGAGGGGGg -3'
miRNA:   3'- -GGAuUaAG-GGGUaaCCCG------------UCUCCCCC- -5'
4045 3' -54 NC_001650.1 + 29037 0.66 0.974912
Target:  5'- cCCgcacgCCCUcg-GGGCGcGGGGGGu -3'
miRNA:   3'- -GGauuaaGGGGuaaCCCGUcUCCCCC- -5'
4045 3' -54 NC_001650.1 + 48157 0.66 0.974912
Target:  5'- aCCUAcaUCUUC--UGGGCGGuGGuGGGg -3'
miRNA:   3'- -GGAUuaAGGGGuaACCCGUCuCC-CCC- -5'
4045 3' -54 NC_001650.1 + 66087 0.66 0.972261
Target:  5'- aCCUGuucagUCCCaaggUGGGCGGGcaccuGGcGGGg -3'
miRNA:   3'- -GGAUua---AGGGgua-ACCCGUCU-----CC-CCC- -5'
4045 3' -54 NC_001650.1 + 155949 0.66 0.972261
Target:  5'- aCCUGuaguacagGUUCagaaaCAcgGGGCAGGGGGGc -3'
miRNA:   3'- -GGAU--------UAAGgg---GUaaCCCGUCUCCCCc -5'
4045 3' -54 NC_001650.1 + 7730 0.66 0.972261
Target:  5'- aCUUAGUggaaggUCCCCAUUGGGCcc-GGGu- -3'
miRNA:   3'- -GGAUUA------AGGGGUAACCCGucuCCCcc -5'
4045 3' -54 NC_001650.1 + 38302 0.66 0.972261
Target:  5'- -----gUCCCCGUggccaaacGGCGGuguGGGGGg -3'
miRNA:   3'- ggauuaAGGGGUAac------CCGUCu--CCCCC- -5'
4045 3' -54 NC_001650.1 + 174437 0.66 0.972261
Target:  5'- aCUUAGUggaaggUCCCCAUUGGGCcc-GGGu- -3'
miRNA:   3'- -GGAUUA------AGGGGUAACCCGucuCCCcc -5'
4045 3' -54 NC_001650.1 + 162916 0.66 0.969414
Target:  5'- cCCUgGGUUCUCUAccucGGCAGgcAGGGGGa -3'
miRNA:   3'- -GGA-UUAAGGGGUaac-CCGUC--UCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.