miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4046 3' -52.8 NC_001650.1 + 160681 0.66 0.986419
Target:  5'- uGGCCaUC-UUGGCCccggccucGGGGUAGAa -3'
miRNA:   3'- cCCGGaAGuAACCGGua------CCUCAUCUc -5'
4046 3' -52.8 NC_001650.1 + 59746 0.66 0.986419
Target:  5'- gGGGCCcg---UGGCCcccGGGGgcGAGg -3'
miRNA:   3'- -CCCGGaaguaACCGGua-CCUCauCUC- -5'
4046 3' -52.8 NC_001650.1 + 142423 0.66 0.986419
Target:  5'- cGGGCCcgagggCAUcaUGGCCGUGGAc----- -3'
miRNA:   3'- -CCCGGaa----GUA--ACCGGUACCUcaucuc -5'
4046 3' -52.8 NC_001650.1 + 158256 0.66 0.986419
Target:  5'- gGGGCUggc---GGCCGUGGAGgccUGGAu -3'
miRNA:   3'- -CCCGGaaguaaCCGGUACCUC---AUCUc -5'
4046 3' -52.8 NC_001650.1 + 3076 0.66 0.986419
Target:  5'- gGGGgUggCAggGGuCCAaggGGGGUAGAGg -3'
miRNA:   3'- -CCCgGaaGUaaCC-GGUa--CCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 169783 0.66 0.986419
Target:  5'- gGGGgUggCAggGGuCCAaggGGGGUAGAGg -3'
miRNA:   3'- -CCCgGaaGUaaCC-GGUa--CCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 31861 0.66 0.986253
Target:  5'- aGGGCCUUCcaagaaaccaacgAaaGGUgAUGGAGU-GAGa -3'
miRNA:   3'- -CCCGGAAG-------------UaaCCGgUACCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 155161 0.66 0.984693
Target:  5'- uGGGCCcUCcuc--CCGUGGuAGUGGAGg -3'
miRNA:   3'- -CCCGGaAGuaaccGGUACC-UCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 179865 0.66 0.984693
Target:  5'- uGGCacgUCAUcucUGGCCAauggGGAGccgGGAGg -3'
miRNA:   3'- cCCGga-AGUA---ACCGGUa---CCUCa--UCUC- -5'
4046 3' -52.8 NC_001650.1 + 13158 0.66 0.984693
Target:  5'- uGGCacgUCAUcucUGGCCAauggGGAGccgGGAGg -3'
miRNA:   3'- cCCGga-AGUA---ACCGGUa---CCUCa--UCUC- -5'
4046 3' -52.8 NC_001650.1 + 56746 0.66 0.982206
Target:  5'- uGGGCCUUCAcUGGCCccaaaaaacacaacAUaguauucccgGGGGUAGc- -3'
miRNA:   3'- -CCCGGAAGUaACCGG--------------UA----------CCUCAUCuc -5'
4046 3' -52.8 NC_001650.1 + 106117 0.66 0.980747
Target:  5'- cGGGCC-----UGGCCAcaaggGGGGUGGuGg -3'
miRNA:   3'- -CCCGGaaguaACCGGUa----CCUCAUCuC- -5'
4046 3' -52.8 NC_001650.1 + 50547 0.66 0.980747
Target:  5'- cGGGCC-UCGcucGCCcgGGAGgaggAGGGg -3'
miRNA:   3'- -CCCGGaAGUaacCGGuaCCUCa---UCUC- -5'
4046 3' -52.8 NC_001650.1 + 105342 0.66 0.980747
Target:  5'- --aCCUUCAgggUGGCUAUGuuGUGGGGg -3'
miRNA:   3'- cccGGAAGUa--ACCGGUACcuCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 172092 0.66 0.97851
Target:  5'- aGGGUCcUCAUgggugUGuGCCAgggggguuUGGGGUGGGGc -3'
miRNA:   3'- -CCCGGaAGUA-----AC-CGGU--------ACCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 5385 0.66 0.97851
Target:  5'- aGGGUCcUCAUgggugUGuGCCAgggggguuUGGGGUGGGGc -3'
miRNA:   3'- -CCCGGaAGUA-----AC-CGGU--------ACCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 62842 0.66 0.97851
Target:  5'- cGGCCggggCGaUGGCCAgcauggUGGAGaAGGGu -3'
miRNA:   3'- cCCGGaa--GUaACCGGU------ACCUCaUCUC- -5'
4046 3' -52.8 NC_001650.1 + 131810 0.67 0.976087
Target:  5'- aGGGCCUUCcuGUUcaGGCCggGGcGGUGGc- -3'
miRNA:   3'- -CCCGGAAG--UAA--CCGGuaCC-UCAUCuc -5'
4046 3' -52.8 NC_001650.1 + 167793 0.67 0.976087
Target:  5'- cGGGCCccCAUUGGCUugAUGGuGUGu-- -3'
miRNA:   3'- -CCCGGaaGUAACCGG--UACCuCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 1086 0.67 0.976087
Target:  5'- cGGGCCccCAUUGGCUugAUGGuGUGu-- -3'
miRNA:   3'- -CCCGGaaGUAACCGG--UACCuCAUcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.