miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4046 3' -52.8 NC_001650.1 + 6544 1.11 0.004909
Target:  5'- aGGGCCUUCAUUGGCCAUGGAGUAGAGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 173251 1.11 0.004909
Target:  5'- aGGGCCUUCAUUGGCCAUGGAGUAGAGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 5925 1.01 0.022335
Target:  5'- aGGGCCUUCAUUGGCCAUGGGGUuGAGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 172632 1 0.0264
Target:  5'- aGGGCCUUCAUUGGCCAUGGGGU-GAGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 173374 0.91 0.088448
Target:  5'- aGGGCCUUCAUUGGCCAUGGuAGUAc-- -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACC-UCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 6667 0.91 0.088448
Target:  5'- aGGGCCUUCAUUGGCCAUGGuAGUAc-- -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACC-UCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 6148 0.91 0.090861
Target:  5'- cGGUCUUCAUUGGCCAUGGGGUuGAGu -3'
miRNA:   3'- cCCGGAAGUAACCGGUACCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 172855 0.91 0.090861
Target:  5'- cGGUCUUCAUUGGCCAUGGGGUuGAGu -3'
miRNA:   3'- cCCGGAAGUAACCGGUACCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 182464 0.77 0.546505
Target:  5'- aGGGCCUcCA-UGGCCaAUGGGG-AGAGg -3'
miRNA:   3'- -CCCGGAaGUaACCGG-UACCUCaUCUC- -5'
4046 3' -52.8 NC_001650.1 + 15757 0.77 0.546505
Target:  5'- aGGGCCUcCA-UGGCCaAUGGGG-AGAGg -3'
miRNA:   3'- -CCCGGAaGUaACCGG-UACCUCaUCUC- -5'
4046 3' -52.8 NC_001650.1 + 68208 0.76 0.587395
Target:  5'- gGGGCCcUCuuuagggaGGCCGUGGAgGUGGAGu -3'
miRNA:   3'- -CCCGGaAGuaa-----CCGGUACCU-CAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 168717 0.76 0.616359
Target:  5'- cGGCCcacccucucccCAUUGGCCAUGGAGgccagGGGGg -3'
miRNA:   3'- cCCGGaa---------GUAACCGGUACCUCa----UCUC- -5'
4046 3' -52.8 NC_001650.1 + 2010 0.76 0.616359
Target:  5'- cGGCCcacccucucccCAUUGGCCAUGGAGgccagGGGGg -3'
miRNA:   3'- cCCGGaa---------GUAACCGGUACCUCa----UCUC- -5'
4046 3' -52.8 NC_001650.1 + 56859 0.75 0.671299
Target:  5'- uGGGCCUaCAUUGGCCAaacagcauaaacaugGGAGUguguaaagcuaAGAGa -3'
miRNA:   3'- -CCCGGAaGUAACCGGUa--------------CCUCA-----------UCUC- -5'
4046 3' -52.8 NC_001650.1 + 173953 0.75 0.680572
Target:  5'- gGGGUCUUUAUUGGCCGaGGgugcAGUGGGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUaCC----UCAUCUc -5'
4046 3' -52.8 NC_001650.1 + 7246 0.75 0.680572
Target:  5'- gGGGUCUUUAUUGGCCGaGGgugcAGUGGGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUaCC----UCAUCUc -5'
4046 3' -52.8 NC_001650.1 + 169456 0.74 0.7313
Target:  5'- aGGCCUcUAUUGGCCAgaGGGGUcauGGGGg -3'
miRNA:   3'- cCCGGAaGUAACCGGUa-CCUCA---UCUC- -5'
4046 3' -52.8 NC_001650.1 + 2749 0.74 0.7313
Target:  5'- aGGCCUcUAUUGGCCAgaGGGGUcauGGGGg -3'
miRNA:   3'- cCCGGAaGUAACCGGUa-CCUCA---UCUC- -5'
4046 3' -52.8 NC_001650.1 + 130057 0.72 0.790076
Target:  5'- cGGGCCUaCGUgcaggggguggagagGGCCggGGAGgggGGAGa -3'
miRNA:   3'- -CCCGGAaGUAa--------------CCGGuaCCUCa--UCUC- -5'
4046 3' -52.8 NC_001650.1 + 6310 0.72 0.798338
Target:  5'- uGGGUCccUAUUgGGCCAUGGGGUuGAGu -3'
miRNA:   3'- -CCCGGaaGUAA-CCGGUACCUCAuCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.