miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4046 3' -52.8 NC_001650.1 + 6913 0.67 0.973469
Target:  5'- aGGGUCUUUAUUGGCCAguguugcaGcGGGUAu-- -3'
miRNA:   3'- -CCCGGAAGUAACCGGUa-------C-CUCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 132193 0.67 0.973469
Target:  5'- cGGGU--UCGaggUGGCCGUGGGGUGc-- -3'
miRNA:   3'- -CCCGgaAGUa--ACCGGUACCUCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 173620 0.67 0.973469
Target:  5'- aGGGUCUUUAUUGGCCAguguugcaGcGGGUAu-- -3'
miRNA:   3'- -CCCGGAAGUAACCGGUa-------C-CUCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 89230 0.67 0.973469
Target:  5'- uGGGCCUUgGcuaUGGUCAUGGccAGcuUGGAGc -3'
miRNA:   3'- -CCCGGAAgUa--ACCGGUACC--UC--AUCUC- -5'
4046 3' -52.8 NC_001650.1 + 153954 0.67 0.97065
Target:  5'- cGGGCCUUCuagggGGCgGgaGGGGUgcAGGGc -3'
miRNA:   3'- -CCCGGAAGuaa--CCGgUa-CCUCA--UCUC- -5'
4046 3' -52.8 NC_001650.1 + 109377 0.67 0.97065
Target:  5'- uGGCCggCAggagccUGGCCAgGGAGUuGGGc -3'
miRNA:   3'- cCCGGaaGUa-----ACCGGUaCCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 19311 0.67 0.970062
Target:  5'- cGGCCgcgguggGGCCcggGGGGUGGGGu -3'
miRNA:   3'- cCCGGaaguaa-CCGGua-CCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 177415 0.67 0.963021
Target:  5'- gGGGCCUUgGguaacuaucccagUGGCCcaAUGGGGgauaagGGGGg -3'
miRNA:   3'- -CCCGGAAgUa------------ACCGG--UACCUCa-----UCUC- -5'
4046 3' -52.8 NC_001650.1 + 10708 0.67 0.963021
Target:  5'- gGGGCCUUgGguaacuaucccagUGGCCcaAUGGGGgauaagGGGGg -3'
miRNA:   3'- -CCCGGAAgUa------------ACCGG--UACCUCa-----UCUC- -5'
4046 3' -52.8 NC_001650.1 + 128316 0.68 0.957227
Target:  5'- aGGGCCUUCGcggaGGCgGUGGgcgaGGUgauGGGGg -3'
miRNA:   3'- -CCCGGAAGUaa--CCGgUACC----UCA---UCUC- -5'
4046 3' -52.8 NC_001650.1 + 46080 0.68 0.953306
Target:  5'- cGGGCCg--GUUGGCCaAUGaGAGacgaGGAGg -3'
miRNA:   3'- -CCCGGaagUAACCGG-UAC-CUCa---UCUC- -5'
4046 3' -52.8 NC_001650.1 + 83345 0.68 0.949151
Target:  5'- gGGGgCUUUAUcucgGGCUguGUGGGGUuAGAGa -3'
miRNA:   3'- -CCCgGAAGUAa---CCGG--UACCUCA-UCUC- -5'
4046 3' -52.8 NC_001650.1 + 117846 0.68 0.940121
Target:  5'- cGGGCaggcacaCGUUGGCCA-GGuugcaGGUGGAGg -3'
miRNA:   3'- -CCCGgaa----GUAACCGGUaCC-----UCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 1754 0.68 0.940121
Target:  5'- --cCCUcucccCAUUGGCCAUGGAGgcccugugGGAGg -3'
miRNA:   3'- cccGGAa----GUAACCGGUACCUCa-------UCUC- -5'
4046 3' -52.8 NC_001650.1 + 168461 0.68 0.940121
Target:  5'- --cCCUcucccCAUUGGCCAUGGAGgcccugugGGAGg -3'
miRNA:   3'- cccGGAa----GUAACCGGUACCUCa-------UCUC- -5'
4046 3' -52.8 NC_001650.1 + 182268 0.69 0.924746
Target:  5'- uGGGCCggUUGUUGGCCGcucggcUGGuuGGUGGGu -3'
miRNA:   3'- -CCCGGa-AGUAACCGGU------ACC--UCAUCUc -5'
4046 3' -52.8 NC_001650.1 + 29244 0.69 0.924746
Target:  5'- cGGGUaCUUCAUaGGCaggGGGGUGGAc -3'
miRNA:   3'- -CCCG-GAAGUAaCCGguaCCUCAUCUc -5'
4046 3' -52.8 NC_001650.1 + 15561 0.69 0.924746
Target:  5'- uGGGCCggUUGUUGGCCGcucggcUGGuuGGUGGGu -3'
miRNA:   3'- -CCCGGa-AGUAACCGGU------ACC--UCAUCUc -5'
4046 3' -52.8 NC_001650.1 + 66900 0.7 0.907162
Target:  5'- gGGGCCggggagCAUggGGCCggGGAGcaUGGGGc -3'
miRNA:   3'- -CCCGGaa----GUAa-CCGGuaCCUC--AUCUC- -5'
4046 3' -52.8 NC_001650.1 + 72311 0.7 0.900815
Target:  5'- -aGCCaUCugcUUGGCCAUGGAcgcGUAGGGc -3'
miRNA:   3'- ccCGGaAGu--AACCGGUACCU---CAUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.