miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4046 3' -52.8 NC_001650.1 + 701 0.71 0.87307
Target:  5'- cGGGCCgccCAUUGGCCGagaGGAGUc--- -3'
miRNA:   3'- -CCCGGaa-GUAACCGGUa--CCUCAucuc -5'
4046 3' -52.8 NC_001650.1 + 1086 0.67 0.976087
Target:  5'- cGGGCCccCAUUGGCUugAUGGuGUGu-- -3'
miRNA:   3'- -CCCGGaaGUAACCGG--UACCuCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 1754 0.68 0.940121
Target:  5'- --cCCUcucccCAUUGGCCAUGGAGgcccugugGGAGg -3'
miRNA:   3'- cccGGAa----GUAACCGGUACCUCa-------UCUC- -5'
4046 3' -52.8 NC_001650.1 + 2010 0.76 0.616359
Target:  5'- cGGCCcacccucucccCAUUGGCCAUGGAGgccagGGGGg -3'
miRNA:   3'- cCCGGaa---------GUAACCGGUACCUCa----UCUC- -5'
4046 3' -52.8 NC_001650.1 + 2749 0.74 0.7313
Target:  5'- aGGCCUcUAUUGGCCAgaGGGGUcauGGGGg -3'
miRNA:   3'- cCCGGAaGUAACCGGUa-CCUCA---UCUC- -5'
4046 3' -52.8 NC_001650.1 + 3076 0.66 0.986419
Target:  5'- gGGGgUggCAggGGuCCAaggGGGGUAGAGg -3'
miRNA:   3'- -CCCgGaaGUaaCC-GGUa--CCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 5385 0.66 0.97851
Target:  5'- aGGGUCcUCAUgggugUGuGCCAgggggguuUGGGGUGGGGc -3'
miRNA:   3'- -CCCGGaAGUA-----AC-CGGU--------ACCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 5761 0.72 0.807371
Target:  5'- cGGCCUUUAUUGGCCAUcuGA-UAGGGu -3'
miRNA:   3'- cCCGGAAGUAACCGGUAc-CUcAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 5925 1.01 0.022335
Target:  5'- aGGGCCUUCAUUGGCCAUGGGGUuGAGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 6148 0.91 0.090861
Target:  5'- cGGUCUUCAUUGGCCAUGGGGUuGAGu -3'
miRNA:   3'- cCCGGAAGUAACCGGUACCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 6310 0.72 0.798338
Target:  5'- uGGGUCccUAUUgGGCCAUGGGGUuGAGu -3'
miRNA:   3'- -CCCGGaaGUAA-CCGGUACCUCAuCUC- -5'
4046 3' -52.8 NC_001650.1 + 6544 1.11 0.004909
Target:  5'- aGGGCCUUCAUUGGCCAUGGAGUAGAGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACCUCAUCUC- -5'
4046 3' -52.8 NC_001650.1 + 6667 0.91 0.088448
Target:  5'- aGGGCCUUCAUUGGCCAUGGuAGUAc-- -3'
miRNA:   3'- -CCCGGAAGUAACCGGUACC-UCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 6913 0.67 0.973469
Target:  5'- aGGGUCUUUAUUGGCCAguguugcaGcGGGUAu-- -3'
miRNA:   3'- -CCCGGAAGUAACCGGUa-------C-CUCAUcuc -5'
4046 3' -52.8 NC_001650.1 + 7246 0.75 0.680572
Target:  5'- gGGGUCUUUAUUGGCCGaGGgugcAGUGGGu -3'
miRNA:   3'- -CCCGGAAGUAACCGGUaCC----UCAUCUc -5'
4046 3' -52.8 NC_001650.1 + 10708 0.67 0.963021
Target:  5'- gGGGCCUUgGguaacuaucccagUGGCCcaAUGGGGgauaagGGGGg -3'
miRNA:   3'- -CCCGGAAgUa------------ACCGG--UACCUCa-----UCUC- -5'
4046 3' -52.8 NC_001650.1 + 13158 0.66 0.984693
Target:  5'- uGGCacgUCAUcucUGGCCAauggGGAGccgGGAGg -3'
miRNA:   3'- cCCGga-AGUA---ACCGGUa---CCUCa--UCUC- -5'
4046 3' -52.8 NC_001650.1 + 15494 0.72 0.816241
Target:  5'- uGGCCUcCA-UGGCCaAUGGGG-AGAGg -3'
miRNA:   3'- cCCGGAaGUaACCGG-UACCUCaUCUC- -5'
4046 3' -52.8 NC_001650.1 + 15561 0.69 0.924746
Target:  5'- uGGGCCggUUGUUGGCCGcucggcUGGuuGGUGGGu -3'
miRNA:   3'- -CCCGGa-AGUAACCGGU------ACC--UCAUCUc -5'
4046 3' -52.8 NC_001650.1 + 15757 0.77 0.546505
Target:  5'- aGGGCCUcCA-UGGCCaAUGGGG-AGAGg -3'
miRNA:   3'- -CCCGGAaGUaACCGG-UACCUCaUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.