miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4046 5' -58.5 NC_001650.1 + 52696 0.66 0.855909
Target:  5'- gGCCUCUcGGGCCgcagcggggagacggUCCAggGGGCCAcGGu -3'
miRNA:   3'- -UGGGGA-UUCGG---------------GGGUaaCCCGGUaCC- -5'
4046 5' -58.5 NC_001650.1 + 54613 0.66 0.852862
Target:  5'- cGCCCgUGAuGCCCCCGaac-GCCAUGu -3'
miRNA:   3'- -UGGGgAUU-CGGGGGUaaccCGGUACc -5'
4046 5' -58.5 NC_001650.1 + 75037 0.66 0.852862
Target:  5'- cGCCCCgcguacGGCUcguCCCAcucGGGCCggGGg -3'
miRNA:   3'- -UGGGGau----UCGG---GGGUaa-CCCGGuaCC- -5'
4046 5' -58.5 NC_001650.1 + 177391 0.66 0.850556
Target:  5'- aGCCCCcuGGCCCaauggguggcagGGGCCuUGGg -3'
miRNA:   3'- -UGGGGauUCGGGgguaa-------CCCGGuACC- -5'
4046 5' -58.5 NC_001650.1 + 10684 0.66 0.850556
Target:  5'- aGCCCCcuGGCCCaauggguggcagGGGCCuUGGg -3'
miRNA:   3'- -UGGGGauUCGGGgguaa-------CCCGGuACC- -5'
4046 5' -58.5 NC_001650.1 + 108752 0.66 0.845112
Target:  5'- aGCCCCUcAGGUgCCCCGUguacaGGuGCCAUa- -3'
miRNA:   3'- -UGGGGA-UUCG-GGGGUAa----CC-CGGUAcc -5'
4046 5' -58.5 NC_001650.1 + 56831 0.66 0.845112
Target:  5'- gGCUCUcgGGGCUCCUGgcGGGCUcgGGg -3'
miRNA:   3'- -UGGGGa-UUCGGGGGUaaCCCGGuaCC- -5'
4046 5' -58.5 NC_001650.1 + 179249 0.66 0.84275
Target:  5'- gACCCCaauuAGCCCCCAauuaauuaacaggaUU-GGCCAUa- -3'
miRNA:   3'- -UGGGGau--UCGGGGGU--------------AAcCCGGUAcc -5'
4046 5' -58.5 NC_001650.1 + 12542 0.66 0.84275
Target:  5'- gACCCCaauuAGCCCCCAauuaauuaacaggaUU-GGCCAUa- -3'
miRNA:   3'- -UGGGGau--UCGGGGGU--------------AAcCCGGUAcc -5'
4046 5' -58.5 NC_001650.1 + 27893 0.66 0.837177
Target:  5'- cACCCCcu-GCCCCCcgUcgaggcccaccGGGUCA-GGa -3'
miRNA:   3'- -UGGGGauuCGGGGGuaA-----------CCCGGUaCC- -5'
4046 5' -58.5 NC_001650.1 + 52598 0.66 0.837177
Target:  5'- cGCCCggGAGCUCUgGgauggGGGCCAcUGGc -3'
miRNA:   3'- -UGGGgaUUCGGGGgUaa---CCCGGU-ACC- -5'
4046 5' -58.5 NC_001650.1 + 62649 0.66 0.837177
Target:  5'- aGCCCC-GAGCCCCUg--GGGCa---- -3'
miRNA:   3'- -UGGGGaUUCGGGGGuaaCCCGguacc -5'
4046 5' -58.5 NC_001650.1 + 111331 0.66 0.837177
Target:  5'- uCCCCUGgaGGCCcugCCCAUccugaGGGCCAa-- -3'
miRNA:   3'- uGGGGAU--UCGG---GGGUAa----CCCGGUacc -5'
4046 5' -58.5 NC_001650.1 + 113919 0.66 0.836374
Target:  5'- uGCCUCUGcuuggugGGCCugcgCCCGUcgccaUGGGCgAUGGu -3'
miRNA:   3'- -UGGGGAU-------UCGG----GGGUA-----ACCCGgUACC- -5'
4046 5' -58.5 NC_001650.1 + 110712 0.66 0.834762
Target:  5'- cACCUCgcagguggcGAGCUggccguggcugaggCCCGggGGGCCGUGGc -3'
miRNA:   3'- -UGGGGa--------UUCGG--------------GGGUaaCCCGGUACC- -5'
4046 5' -58.5 NC_001650.1 + 170534 0.66 0.832331
Target:  5'- cCCCCUAgccuguagguaAGCCCCCcAUccucaccuuuuucaGGGCCA-GGg -3'
miRNA:   3'- uGGGGAU-----------UCGGGGG-UAa-------------CCCGGUaCC- -5'
4046 5' -58.5 NC_001650.1 + 3827 0.66 0.832331
Target:  5'- cCCCCUAgccuguagguaAGCCCCCcAUccucaccuuuuucaGGGCCA-GGg -3'
miRNA:   3'- uGGGGAU-----------UCGGGGG-UAa-------------CCCGGUaCC- -5'
4046 5' -58.5 NC_001650.1 + 75525 0.66 0.829065
Target:  5'- gACCCCcgagGAGUCgCCCAgcGcGGCCA-GGu -3'
miRNA:   3'- -UGGGGa---UUCGG-GGGUaaC-CCGGUaCC- -5'
4046 5' -58.5 NC_001650.1 + 16228 0.66 0.829065
Target:  5'- aACCCaugaUGGGCgUCCCAUcuagccaauggGGGCCcgGGg -3'
miRNA:   3'- -UGGGg---AUUCG-GGGGUAa----------CCCGGuaCC- -5'
4046 5' -58.5 NC_001650.1 + 171116 0.66 0.829065
Target:  5'- cACCCCgu--CCCCCAUU-GGCCGg-- -3'
miRNA:   3'- -UGGGGauucGGGGGUAAcCCGGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.