Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 405 | 3' | -59.7 | AC_000011.1 | + | 15448 | 0.66 | 0.416595 |
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Target: 5'- --gGGCAG-GugCGGCgUCUGGCGUCa -3' miRNA: 3'- gggCCGUUgCugGCCGaGGACUGCGG- -5' |
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| 405 | 3' | -59.7 | AC_000011.1 | + | 13411 | 0.66 | 0.416595 |
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Target: 5'- gCCgCGGCAgcacccucGCGGCCGGacagcgCCgaggacgGGCGUCg -3' miRNA: 3'- -GG-GCCGU--------UGCUGGCCga----GGa------CUGCGG- -5' |
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| 405 | 3' | -59.7 | AC_000011.1 | + | 8570 | 0.66 | 0.42498 |
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Target: 5'- aCUGGCGugaGCGACgacgcgaCGGUUgacguccuggaUCUGACGCCu -3' miRNA: 3'- gGGCCGU---UGCUG-------GCCGA-----------GGACUGCGG- -5' |
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| 405 | 3' | -59.7 | AC_000011.1 | + | 12170 | 0.66 | 0.425918 |
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Target: 5'- aCCGGCucuCGGCCa--UCCUGGagGCCg -3' miRNA: 3'- gGGCCGuu-GCUGGccgAGGACUg-CGG- -5' |
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| 405 | 3' | -59.7 | AC_000011.1 | + | 15689 | 0.66 | 0.425918 |
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Target: 5'- cCCCGccGCcGCGcCCGuCUCCaccgugGACGCCg -3' miRNA: 3'- -GGGC--CGuUGCuGGCcGAGGa-----CUGCGG- -5' |
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| 405 | 3' | -59.7 | AC_000011.1 | + | 21269 | 0.66 | 0.425918 |
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Target: 5'- aCCGGgGGCGAgcaCUGGCUggCCUu-CGCCu -3' miRNA: 3'- gGGCCgUUGCU---GGCCGA--GGAcuGCGG- -5' |
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| 405 | 3' | -59.7 | AC_000011.1 | + | 13647 | 0.66 | 0.425918 |
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Target: 5'- gCCCGGgGAuCGuccCUGuGCUCCUG-CGCa -3' miRNA: 3'- -GGGCCgUU-GCu--GGC-CGAGGACuGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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