Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
405 | 3' | -59.7 | AC_000011.1 | + | 12111 | 0.73 | 0.137073 |
Target: 5'- gCCGG--ACGGCUGGCUCUgcaGCGCCg -3' miRNA: 3'- gGGCCguUGCUGGCCGAGGac-UGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 33864 | 0.74 | 0.129763 |
Target: 5'- -gCGGCAGCGACUGcuGCggggCCUGAUGCg -3' miRNA: 3'- ggGCCGUUGCUGGC--CGa---GGACUGCGg -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 16867 | 0.74 | 0.113039 |
Target: 5'- cCCCGGCGcaaguacggcGCGGCCaGcCUgCUGAUGCCc -3' miRNA: 3'- -GGGCCGU----------UGCUGGcC-GAgGACUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 17785 | 0.79 | 0.054241 |
Target: 5'- aCCCGGUGcCGcccGCCGGCUCCguggaGAUGCCg -3' miRNA: 3'- -GGGCCGUuGC---UGGCCGAGGa----CUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 7785 | 0.79 | 0.052709 |
Target: 5'- cUCCGGgGACGACCGGCUCgUcGAgcuCGCCc -3' miRNA: 3'- -GGGCCgUUGCUGGCCGAGgA-CU---GCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 15830 | 0.81 | 0.038294 |
Target: 5'- gCCgGGCGAUGcgccgccGCCGGCUCUUGGCGCg -3' miRNA: 3'- -GGgCCGUUGC-------UGGCCGAGGACUGCGg -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 20430 | 1.12 | 0.000168 |
Target: 5'- gCCCGGCAACGACCGGCUCCUGACGCCc -3' miRNA: 3'- -GGGCCGUUGCUGGCCGAGGACUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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