Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
405 | 5' | -52 | AC_000011.1 | + | 4676 | 0.66 | 0.81774 |
Target: 5'- cCGGGAUCGAGgGUACCuuuGUCccccagucCGGCa -3' miRNA: 3'- aGCUUUAGUUCgCGUGG---CAGcu------GCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 4857 | 0.67 | 0.766936 |
Target: 5'- aUCGggGUCAucuacGGCccCACCGgCuGCGGCa -3' miRNA: 3'- -AGCuuUAGU-----UCGc-GUGGCaGcUGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 5457 | 0.66 | 0.797971 |
Target: 5'- cUCGggGgcgUAGGCGUccgcGCCG-CaGugGGCg -3' miRNA: 3'- -AGCuuUa--GUUCGCG----UGGCaG-CugCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 7709 | 0.7 | 0.598329 |
Target: 5'- gCGAGAUCGAGgGCGagcUCGACGaGCc -3' miRNA: 3'- aGCUUUAGUUCgCGUggcAGCUGC-CG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 7987 | 0.74 | 0.368187 |
Target: 5'- aCGAGuguUC-GGCGCGCCGUCGGCa-- -3' miRNA: 3'- aGCUUu--AGuUCGCGUGGCAGCUGccg -5' |
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405 | 5' | -52 | AC_000011.1 | + | 8240 | 0.69 | 0.621239 |
Target: 5'- gCGGAGUCAggucAGUGgGCag-CGGCGGCg -3' miRNA: 3'- aGCUUUAGU----UCGCgUGgcaGCUGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 8462 | 0.66 | 0.787798 |
Target: 5'- gCGAGGac--GCGCGCCG--GGCGGCa -3' miRNA: 3'- aGCUUUaguuCGCGUGGCagCUGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 8663 | 0.7 | 0.541768 |
Target: 5'- uUCGAcagAAUCAAucucgGUAUCGUUGACGGCg -3' miRNA: 3'- -AGCU---UUAGUUcg---CGUGGCAGCUGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 8970 | 0.69 | 0.621239 |
Target: 5'- cUCGcccagguGGUCAuGCGCGCCGgcgauccCGAgGGCg -3' miRNA: 3'- -AGCu------UUAGUuCGCGUGGCa------GCUgCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 9110 | 0.69 | 0.620091 |
Target: 5'- gCGAAGUUGAaaaacugggaguuGCGCGCCGa-GACGGUc -3' miRNA: 3'- aGCUUUAGUU-------------CGCGUGGCagCUGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 9392 | 0.66 | 0.776405 |
Target: 5'- gCGAGAccaUCGAGCGCuucaucgACCGUcugcccgugcgcCGcCGGCg -3' miRNA: 3'- aGCUUU---AGUUCGCG-------UGGCA------------GCuGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 9437 | 0.73 | 0.39507 |
Target: 5'- gCGAGGaCGGGCGCGCCGUcacCGAgaccaugcgacgcCGGCg -3' miRNA: 3'- aGCUUUaGUUCGCGUGGCA---GCU-------------GCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 10593 | 0.67 | 0.766936 |
Target: 5'- aUGAGAcuagUAAGCGCggaaagcggccgACCG-CGAUGGCu -3' miRNA: 3'- aGCUUUa---GUUCGCG------------UGGCaGCUGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 10984 | 0.67 | 0.756273 |
Target: 5'- gCGAGGggcuGGCGCGCCugggggcgucGUCGccggaGCGGCa -3' miRNA: 3'- aGCUUUagu-UCGCGUGG----------CAGC-----UGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 11473 | 0.68 | 0.678496 |
Target: 5'- -aGGAA-CAGcUGCGCCGUCaGCGGCu -3' miRNA: 3'- agCUUUaGUUcGCGUGGCAGcUGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 12742 | 0.69 | 0.655653 |
Target: 5'- uUCGgcGUCAgcaGGCucgaCACCGUCGcGCGGUc -3' miRNA: 3'- -AGCuuUAGU---UCGc---GUGGCAGC-UGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 12808 | 0.67 | 0.723508 |
Target: 5'- aUCGGc--CAGGCGCA-CGUgGACGaGCa -3' miRNA: 3'- -AGCUuuaGUUCGCGUgGCAgCUGC-CG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 13093 | 0.66 | 0.81774 |
Target: 5'- gCGGucauGUCGAGCGCGgCGcUGGgGGUg -3' miRNA: 3'- aGCUu---UAGUUCGCGUgGCaGCUgCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 13271 | 0.68 | 0.701148 |
Target: 5'- aUUGggGUCGGGCaugucguacucGC-CCGUguagaacccCGGCGGCg -3' miRNA: 3'- -AGCuuUAGUUCG-----------CGuGGCA---------GCUGCCG- -5' |
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405 | 5' | -52 | AC_000011.1 | + | 15769 | 0.68 | 0.701148 |
Target: 5'- -aGAGccggCGgcGGCGCAUCGccCGGCGGCa -3' miRNA: 3'- agCUUua--GU--UCGCGUGGCa-GCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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