Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 405 | 5' | -52 | AC_000011.1 | + | 9110 | 0.69 | 0.620091 |
|
Target: 5'- gCGAAGUUGAaaaacugggaguuGCGCGCCGa-GACGGUc -3' miRNA: 3'- aGCUUUAGUU-------------CGCGUGGCagCUGCCG- -5' |
|||||||
| 405 | 5' | -52 | AC_000011.1 | + | 7709 | 0.7 | 0.598329 |
|
Target: 5'- gCGAGAUCGAGgGCGagcUCGACGaGCc -3' miRNA: 3'- aGCUUUAGUUCgCGUggcAGCUGC-CG- -5' |
|||||||
| 405 | 5' | -52 | AC_000011.1 | + | 8663 | 0.7 | 0.541768 |
|
Target: 5'- uUCGAcagAAUCAAucucgGUAUCGUUGACGGCg -3' miRNA: 3'- -AGCU---UUAGUUcg---CGUGGCAGCUGCCG- -5' |
|||||||
| 405 | 5' | -52 | AC_000011.1 | + | 17844 | 0.72 | 0.476468 |
|
Target: 5'- aCGGAGccggCGGGCgGCACCGgguccaGGCGGCu -3' miRNA: 3'- aGCUUUa---GUUCG-CGUGGCag----CUGCCG- -5' |
|||||||
| 405 | 5' | -52 | AC_000011.1 | + | 27219 | 0.72 | 0.43517 |
|
Target: 5'- gCGAGAUCccGAGCgaaGCAgCGgaagCGGCGGCa -3' miRNA: 3'- aGCUUUAG--UUCG---CGUgGCa---GCUGCCG- -5' |
|||||||
| 405 | 5' | -52 | AC_000011.1 | + | 9437 | 0.73 | 0.39507 |
|
Target: 5'- gCGAGGaCGGGCGCGCCGUcacCGAgaccaugcgacgcCGGCg -3' miRNA: 3'- aGCUUUaGUUCGCGUGGCA---GCU-------------GCCG- -5' |
|||||||
| 405 | 5' | -52 | AC_000011.1 | + | 7987 | 0.74 | 0.368187 |
|
Target: 5'- aCGAGuguUC-GGCGCGCCGUCGGCa-- -3' miRNA: 3'- aGCUUu--AGuUCGCGUGGCAGCUGccg -5' |
|||||||
| 405 | 5' | -52 | AC_000011.1 | + | 20464 | 1.14 | 0.000697 |
|
Target: 5'- uUCGAAAUCAAGCGCACCGUCGACGGCg -3' miRNA: 3'- -AGCUUUAGUUCGCGUGGCAGCUGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home