miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4050 3' -61.8 NC_001650.1 + 161646 0.66 0.745184
Target:  5'- gCgCCGCCGCCCCGGacGGGcGAcagGCa- -3'
miRNA:   3'- -GgGGUGGUGGGGCC--CCCaCUua-CGgu -5'
4050 3' -61.8 NC_001650.1 + 173836 0.66 0.745184
Target:  5'- gUCCAUCcUCCCGGGGGUcucaAAUGCgGg -3'
miRNA:   3'- gGGGUGGuGGGGCCCCCAc---UUACGgU- -5'
4050 3' -61.8 NC_001650.1 + 7129 0.66 0.745184
Target:  5'- gUCCAUCcUCCCGGGGGUcucaAAUGCgGg -3'
miRNA:   3'- gGGGUGGuGGGGCCCCCAc---UUACGgU- -5'
4050 3' -61.8 NC_001650.1 + 118759 0.66 0.745184
Target:  5'- cCCCCGCCGCCCCccuccucGGUGcgcagcacguaGGUGUCAu -3'
miRNA:   3'- -GGGGUGGUGGGGccc----CCAC-----------UUACGGU- -5'
4050 3' -61.8 NC_001650.1 + 61232 0.66 0.745184
Target:  5'- cCCCCGCCcguCCCCGGccacGUGGAgggcggugGCCu -3'
miRNA:   3'- -GGGGUGGu--GGGGCCcc--CACUUa-------CGGu -5'
4050 3' -61.8 NC_001650.1 + 58858 0.66 0.745184
Target:  5'- cCCCCACguCCgCGGGGuUGAGauaaagGCCc -3'
miRNA:   3'- -GGGGUGguGGgGCCCCcACUUa-----CGGu -5'
4050 3' -61.8 NC_001650.1 + 167541 0.66 0.745184
Target:  5'- aCCgCACCcCCCCGGGGuc---UGCCu -3'
miRNA:   3'- -GGgGUGGuGGGGCCCCcacuuACGGu -5'
4050 3' -61.8 NC_001650.1 + 109251 0.66 0.745184
Target:  5'- aCCCC-CCuuCCCCGcGGGGUGGcgauagugggggGcGCCc -3'
miRNA:   3'- -GGGGuGGu-GGGGC-CCCCACU------------UaCGGu -5'
4050 3' -61.8 NC_001650.1 + 834 0.66 0.745184
Target:  5'- aCCgCACCcCCCCGGGGuc---UGCCu -3'
miRNA:   3'- -GGgGUGGuGGGGCCCCcacuuACGGu -5'
4050 3' -61.8 NC_001650.1 + 15084 0.66 0.742433
Target:  5'- gCCCCGCcCGCuuccucuuuacagaCCCGGGca-GggUGCCAg -3'
miRNA:   3'- -GGGGUG-GUG--------------GGGCCCccaCuuACGGU- -5'
4050 3' -61.8 NC_001650.1 + 181791 0.66 0.742433
Target:  5'- gCCCCGCcCGCuuccucuuuacagaCCCGGGca-GggUGCCAg -3'
miRNA:   3'- -GGGGUG-GUG--------------GGGCCCccaCuuACGGU- -5'
4050 3' -61.8 NC_001650.1 + 18740 0.66 0.738753
Target:  5'- gCUCACCGCCCCGGGugcuuccucggGCCGc -3'
miRNA:   3'- gGGGUGGUGGGGCCCccacuua----CGGU- -5'
4050 3' -61.8 NC_001650.1 + 181614 0.66 0.735984
Target:  5'- -gCCACgGCCCaaCGGGGGUGcuGUGUa- -3'
miRNA:   3'- ggGGUGgUGGG--GCCCCCACu-UACGgu -5'
4050 3' -61.8 NC_001650.1 + 48111 0.66 0.735984
Target:  5'- cCUCCugCugACCCUGGGGcUGGAcaagGCCGc -3'
miRNA:   3'- -GGGGugG--UGGGGCCCCcACUUa---CGGU- -5'
4050 3' -61.8 NC_001650.1 + 175827 0.66 0.726703
Target:  5'- aCCCGCCcggugaCCUGGGGGUGGggGg-- -3'
miRNA:   3'- gGGGUGGug----GGGCCCCCACUuaCggu -5'
4050 3' -61.8 NC_001650.1 + 112507 0.66 0.726703
Target:  5'- cCCCCugCACuccugaaaCCCGGcGGGg----GCCAg -3'
miRNA:   3'- -GGGGugGUG--------GGGCC-CCCacuuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 9120 0.66 0.726703
Target:  5'- aCCCGCCcggugaCCUGGGGGUGGggGg-- -3'
miRNA:   3'- gGGGUGGug----GGGCCCCCACUuaCggu -5'
4050 3' -61.8 NC_001650.1 + 57019 0.66 0.723904
Target:  5'- cCUCCGCCGCCCgGGagaccggggccgauGGG-GggUugGCCAa -3'
miRNA:   3'- -GGGGUGGUGGGgCC--------------CCCaCuuA--CGGU- -5'
4050 3' -61.8 NC_001650.1 + 156842 0.66 0.723904
Target:  5'- gCCCCgccauuggaaucgaACCACCUcuCGGGGGcaucgGCCAg -3'
miRNA:   3'- -GGGG--------------UGGUGGG--GCCCCCacuuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 20901 0.66 0.717349
Target:  5'- gUCCC-CCGCCgCCGGGGccgccGUGAggaggGUGuCCAc -3'
miRNA:   3'- -GGGGuGGUGG-GGCCCC-----CACU-----UAC-GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.