miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4050 3' -61.8 NC_001650.1 + 337 0.73 0.342245
Target:  5'- -gCgACCACCUCGGGGGUG---GCCAu -3'
miRNA:   3'- ggGgUGGUGGGGCCCCCACuuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 834 0.66 0.745184
Target:  5'- aCCgCACCcCCCCGGGGuc---UGCCu -3'
miRNA:   3'- -GGgGUGGuGGGGCCCCcacuuACGGu -5'
4050 3' -61.8 NC_001650.1 + 1613 0.7 0.489509
Target:  5'- aCCCCACCccccuACCCCcauuggccgagaGGGGauauuGUGcAAUGCCAg -3'
miRNA:   3'- -GGGGUGG-----UGGGG------------CCCC-----CAC-UUACGGU- -5'
4050 3' -61.8 NC_001650.1 + 1690 0.67 0.673603
Target:  5'- aCCUGCUccaaucuaggcuuaaAgCCUGGGGGUGAAUGUg- -3'
miRNA:   3'- gGGGUGG---------------UgGGGCCCCCACUUACGgu -5'
4050 3' -61.8 NC_001650.1 + 6827 0.68 0.592541
Target:  5'- cCCCUGCCACCCauugggccaGGGGGcuuuauUGCCc -3'
miRNA:   3'- -GGGGUGGUGGGg--------CCCCCacuu--ACGGu -5'
4050 3' -61.8 NC_001650.1 + 7129 0.66 0.745184
Target:  5'- gUCCAUCcUCCCGGGGGUcucaAAUGCgGg -3'
miRNA:   3'- gGGGUGGuGGGGCCCCCAc---UUACGgU- -5'
4050 3' -61.8 NC_001650.1 + 8342 1.09 0.001161
Target:  5'- cCCCCACCACCCCGGGGGUGAAUGCCAc -3'
miRNA:   3'- -GGGGUGGUGGGGCCCCCACUUACGGU- -5'
4050 3' -61.8 NC_001650.1 + 9120 0.66 0.726703
Target:  5'- aCCCGCCcggugaCCUGGGGGUGGggGg-- -3'
miRNA:   3'- gGGGUGGug----GGGCCCCCACUuaCggu -5'
4050 3' -61.8 NC_001650.1 + 9173 0.66 0.698454
Target:  5'- aUUCACC-CCCgGGGuGGUGGggGCUAu -3'
miRNA:   3'- gGGGUGGuGGGgCCC-CCACUuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 9807 0.68 0.611816
Target:  5'- gUCCC-CCACCCaauGGGGGcucgGGuUGCCu -3'
miRNA:   3'- -GGGGuGGUGGGg--CCCCCa---CUuACGGu -5'
4050 3' -61.8 NC_001650.1 + 11863 0.79 0.139541
Target:  5'- aCCCACUaaGCCCCGGGGGUcuaaGGggGCCGc -3'
miRNA:   3'- gGGGUGG--UGGGGCCCCCA----CUuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 14907 0.67 0.669758
Target:  5'- -gCCACgGCCCaaCGGGGGUGcuGAUGUa- -3'
miRNA:   3'- ggGGUGgUGGG--GCCCCCAC--UUACGgu -5'
4050 3' -61.8 NC_001650.1 + 15084 0.66 0.742433
Target:  5'- gCCCCGCcCGCuuccucuuuacagaCCCGGGca-GggUGCCAg -3'
miRNA:   3'- -GGGGUG-GUG--------------GGGCCCccaCuuACGGU- -5'
4050 3' -61.8 NC_001650.1 + 17814 0.67 0.650478
Target:  5'- uUCaCACCuCCCCGGGGG-GcGUGUCu -3'
miRNA:   3'- gGG-GUGGuGGGGCCCCCaCuUACGGu -5'
4050 3' -61.8 NC_001650.1 + 18740 0.66 0.738753
Target:  5'- gCUCACCGCCCCGGGugcuuccucggGCCGc -3'
miRNA:   3'- gGGGUGGUGGGGCCCccacuua----CGGU- -5'
4050 3' -61.8 NC_001650.1 + 20901 0.66 0.717349
Target:  5'- gUCCC-CCGCCgCCGGGGccgccGUGAggaggGUGuCCAc -3'
miRNA:   3'- -GGGGuGGUGG-GGCCCC-----CACU-----UAC-GGU- -5'
4050 3' -61.8 NC_001650.1 + 21061 0.69 0.553399
Target:  5'- cCCCCGCUAucaucucUCCCGcGGGGUcggGAAUGgCCGc -3'
miRNA:   3'- -GGGGUGGU-------GGGGC-CCCCA---CUUAC-GGU- -5'
4050 3' -61.8 NC_001650.1 + 21410 0.67 0.660128
Target:  5'- gCCCacguggcagCACgGCCCCGGGGGUca--GCCc -3'
miRNA:   3'- -GGG---------GUGgUGGGGCCCCCAcuuaCGGu -5'
4050 3' -61.8 NC_001650.1 + 25870 0.67 0.67936
Target:  5'- aCCCCgGCCGCCgaGGGGGgcgccuuUGUCAu -3'
miRNA:   3'- -GGGG-UGGUGGggCCCCCacuu---ACGGU- -5'
4050 3' -61.8 NC_001650.1 + 26008 0.66 0.698454
Target:  5'- uCCUgACCACCCCGGGcacc-AUGUCAg -3'
miRNA:   3'- -GGGgUGGUGGGGCCCccacuUACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.