miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4050 3' -61.8 NC_001650.1 + 26846 0.68 0.573369
Target:  5'- -aCCugCugCCCGGGGccGAGaGCCAc -3'
miRNA:   3'- ggGGugGugGGGCCCCcaCUUaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 48919 0.7 0.504956
Target:  5'- cUCCCGCCGCCCUGacGGUGGucaacaccucugagGUGCCc -3'
miRNA:   3'- -GGGGUGGUGGGGCccCCACU--------------UACGGu -5'
4050 3' -61.8 NC_001650.1 + 165478 0.7 0.507704
Target:  5'- gCCCGaggaagCACCCgGGGcGGUGAGcuucUGCCAc -3'
miRNA:   3'- gGGGUg-----GUGGGgCCC-CCACUU----ACGGU- -5'
4050 3' -61.8 NC_001650.1 + 61134 0.69 0.516908
Target:  5'- cCCCCGCCGCCCCcGGGucccccGCCGc -3'
miRNA:   3'- -GGGGUGGUGGGGcCCCcacuuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 49640 0.69 0.52525
Target:  5'- gCCCCuCUACaaccaggCCUGGGGGUGGGccuUGCCc -3'
miRNA:   3'- -GGGGuGGUG-------GGGCCCCCACUU---ACGGu -5'
4050 3' -61.8 NC_001650.1 + 59432 0.69 0.544902
Target:  5'- aCCCACCGgC-UGGGGGUGAcgcacGCCGu -3'
miRNA:   3'- gGGGUGGUgGgGCCCCCACUua---CGGU- -5'
4050 3' -61.8 NC_001650.1 + 29036 0.69 0.554345
Target:  5'- aCCCGCaCGCCCUcggggcgcgGGGGGUG---GCCGa -3'
miRNA:   3'- gGGGUG-GUGGGG---------CCCCCACuuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 128977 0.69 0.563836
Target:  5'- uCCCCACCugGCCaCCGGcgaaaaGGUGAGgcagGCCu -3'
miRNA:   3'- -GGGGUGG--UGG-GGCCc-----CCACUUa---CGGu -5'
4050 3' -61.8 NC_001650.1 + 131325 0.69 0.563836
Target:  5'- uCCCCGagaCGCaCCCGcGGGUGGGgcccgGCCGg -3'
miRNA:   3'- -GGGGUg--GUG-GGGCcCCCACUUa----CGGU- -5'
4050 3' -61.8 NC_001650.1 + 156123 0.7 0.493124
Target:  5'- uCCagCACCGCCCCGGGGGUcucugagaacaGcaccagcagcgggugGAUGCCc -3'
miRNA:   3'- -GGg-GUGGUGGGGCCCCCA-----------C---------------UUACGGu -5'
4050 3' -61.8 NC_001650.1 + 168320 0.7 0.489509
Target:  5'- aCCCCACCccccuACCCCcauuggccgagaGGGGauauuGUGcAAUGCCAg -3'
miRNA:   3'- -GGGGUGG-----UGGGG------------CCCC-----CAC-UUACGGU- -5'
4050 3' -61.8 NC_001650.1 + 1613 0.7 0.489509
Target:  5'- aCCCCACCccccuACCCCcauuggccgagaGGGGauauuGUGcAAUGCCAg -3'
miRNA:   3'- -GGGGUGG-----UGGGG------------CCCC-----CAC-UUACGGU- -5'
4050 3' -61.8 NC_001650.1 + 175049 1.09 0.001161
Target:  5'- cCCCCACCACCCCGGGGGUGAAUGCCAc -3'
miRNA:   3'- -GGGGUGGUGGGGCCCCCACUUACGGU- -5'
4050 3' -61.8 NC_001650.1 + 35159 0.75 0.251696
Target:  5'- aCCCCAggCGCCgCGGGGGUG-GUGCCc -3'
miRNA:   3'- -GGGGUg-GUGGgGCCCCCACuUACGGu -5'
4050 3' -61.8 NC_001650.1 + 111484 0.73 0.327981
Target:  5'- aCCCCagGCCAcCCCCGGGcuGGUGAuccccGCCGc -3'
miRNA:   3'- -GGGG--UGGU-GGGGCCC--CCACUua---CGGU- -5'
4050 3' -61.8 NC_001650.1 + 136617 0.72 0.356952
Target:  5'- gCCCACCGCCCgGGGGcGUcgGGGcGCCc -3'
miRNA:   3'- gGGGUGGUGGGgCCCC-CA--CUUaCGGu -5'
4050 3' -61.8 NC_001650.1 + 36474 0.72 0.403671
Target:  5'- cCCCCACCugUucaggcagggaCCGGGGGgcaggGCCAg -3'
miRNA:   3'- -GGGGUGGugG-----------GGCCCCCacuuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 155793 0.71 0.411826
Target:  5'- aCCCGCCGCCCgGGGGaccuGUaGAggGUCAg -3'
miRNA:   3'- gGGGUGGUGGGgCCCC----CA-CUuaCGGU- -5'
4050 3' -61.8 NC_001650.1 + 34430 0.7 0.471624
Target:  5'- cCCCCAuuagaaugcuCUACCCCGGGGuGgagagGGcgGCCc -3'
miRNA:   3'- -GGGGU----------GGUGGGGCCCC-Ca----CUuaCGGu -5'
4050 3' -61.8 NC_001650.1 + 155000 0.7 0.489509
Target:  5'- gCCCgGCCACCCuuCGGGGcacGUGc-UGCCAc -3'
miRNA:   3'- -GGGgUGGUGGG--GCCCC---CACuuACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.