miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4050 5' -59.8 NC_001650.1 + 177750 0.66 0.794036
Target:  5'- --gAGGACCCCUccgggcacacGCCCCUCucuuucCCAc -3'
miRNA:   3'- gagUCCUGGGGA----------CGGGGAGuauc--GGU- -5'
4050 5' -59.8 NC_001650.1 + 155692 0.66 0.794036
Target:  5'- cCUCGGGGCCCaccacgGacaCCUCGaAGCCGg -3'
miRNA:   3'- -GAGUCCUGGGga----Cgg-GGAGUaUCGGU- -5'
4050 5' -59.8 NC_001650.1 + 99669 0.66 0.794036
Target:  5'- -aCAGucCCUCaGCCCCUCGcAGCCc -3'
miRNA:   3'- gaGUCcuGGGGaCGGGGAGUaUCGGu -5'
4050 5' -59.8 NC_001650.1 + 11043 0.66 0.794036
Target:  5'- --gAGGACCCCUccgggcacacGCCCCUCucuuucCCAc -3'
miRNA:   3'- gagUCCUGGGGA----------CGGGGAGuauc--GGU- -5'
4050 5' -59.8 NC_001650.1 + 158386 0.66 0.785163
Target:  5'- -gCGGGuACCUCU-CCCCUCugGGCCGc -3'
miRNA:   3'- gaGUCC-UGGGGAcGGGGAGuaUCGGU- -5'
4050 5' -59.8 NC_001650.1 + 85644 0.66 0.767035
Target:  5'- -cCAGGAaguacaCCCUGaCCCCgCAaacucUGGCCAa -3'
miRNA:   3'- gaGUCCUg-----GGGAC-GGGGaGU-----AUCGGU- -5'
4050 5' -59.8 NC_001650.1 + 99037 0.66 0.761505
Target:  5'- uCUCAuGacGCCCCUGUCCCUCugcagcacggauGCCAg -3'
miRNA:   3'- -GAGUcC--UGGGGACGGGGAGuau---------CGGU- -5'
4050 5' -59.8 NC_001650.1 + 159807 0.66 0.757797
Target:  5'- -gUAGGGCCCCU-CCCCguaagCGU-GCCu -3'
miRNA:   3'- gaGUCCUGGGGAcGGGGa----GUAuCGGu -5'
4050 5' -59.8 NC_001650.1 + 160126 0.66 0.757797
Target:  5'- --aGGGACCUCauCCCCgcCAUGGCCAu -3'
miRNA:   3'- gagUCCUGGGGacGGGGa-GUAUCGGU- -5'
4050 5' -59.8 NC_001650.1 + 160558 0.66 0.756867
Target:  5'- gUCAGGAggguaaagaccucCCCCUGCgccCCCUUgagguggGGCCAg -3'
miRNA:   3'- gAGUCCU-------------GGGGACG---GGGAGua-----UCGGU- -5'
4050 5' -59.8 NC_001650.1 + 155845 0.66 0.756867
Target:  5'- cCUCcaGGGACCCCgcguccagcucguUGUCCC-CGUAGUCc -3'
miRNA:   3'- -GAG--UCCUGGGG-------------ACGGGGaGUAUCGGu -5'
4050 5' -59.8 NC_001650.1 + 115401 0.66 0.748454
Target:  5'- --gAGGcGCCCC-GCCCCUCGagcgagGGCCc -3'
miRNA:   3'- gagUCC-UGGGGaCGGGGAGUa-----UCGGu -5'
4050 5' -59.8 NC_001650.1 + 182182 0.66 0.747514
Target:  5'- uUCAuGGGuaccuccCCCCUgGCCUC-CAUGGCCAa -3'
miRNA:   3'- gAGU-CCU-------GGGGA-CGGGGaGUAUCGGU- -5'
4050 5' -59.8 NC_001650.1 + 15475 0.66 0.747514
Target:  5'- uUCAuGGGuaccuccCCCCUgGCCUC-CAUGGCCAa -3'
miRNA:   3'- gAGU-CCU-------GGGGA-CGGGGaGUAUCGGU- -5'
4050 5' -59.8 NC_001650.1 + 14126 0.66 0.744689
Target:  5'- -cCAGGACCCCUGaccacccgcugcaCCC-CAUGGaCCc -3'
miRNA:   3'- gaGUCCUGGGGACg------------GGGaGUAUC-GGu -5'
4050 5' -59.8 NC_001650.1 + 180833 0.66 0.744689
Target:  5'- -cCAGGACCCCUGaccacccgcugcaCCC-CAUGGaCCc -3'
miRNA:   3'- gaGUCCUGGGGACg------------GGGaGUAUC-GGu -5'
4050 5' -59.8 NC_001650.1 + 78469 0.67 0.739014
Target:  5'- -----aACCCCUGUCCCUUGUuGCCAu -3'
miRNA:   3'- gaguccUGGGGACGGGGAGUAuCGGU- -5'
4050 5' -59.8 NC_001650.1 + 133566 0.67 0.739014
Target:  5'- gUCAGGcCCCCcgcgggcaccgGCCCCUCGagggGGCgCAu -3'
miRNA:   3'- gAGUCCuGGGGa----------CGGGGAGUa---UCG-GU- -5'
4050 5' -59.8 NC_001650.1 + 36649 0.67 0.729486
Target:  5'- aUCAGGGucuuCUCCUGCCUgCUggaCGUGGCCGg -3'
miRNA:   3'- gAGUCCU----GGGGACGGG-GA---GUAUCGGU- -5'
4050 5' -59.8 NC_001650.1 + 132336 0.67 0.729486
Target:  5'- ---uGGACCCCUucaaGUCCCUCAaGGCg- -3'
miRNA:   3'- gaguCCUGGGGA----CGGGGAGUaUCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.