miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4051 3' -52.5 NC_001650.1 + 122127 0.66 0.990404
Target:  5'- gGGcGGGGUCGGcUcgGggGcgGGGGCg -3'
miRNA:   3'- -CCaCUCCAGCCcAuaCgaUuaCCCUG- -5'
4051 3' -52.5 NC_001650.1 + 103619 0.66 0.99015
Target:  5'- gGGUGAugaaccugcucagGGU--GGUGUGCUcgcugauGGUGGGGCa -3'
miRNA:   3'- -CCACU-------------CCAgcCCAUACGA-------UUACCCUG- -5'
4051 3' -52.5 NC_001650.1 + 174317 0.66 0.989084
Target:  5'- gGGUGAGGU-GGGUGgcccGCcauUGGG-Cg -3'
miRNA:   3'- -CCACUCCAgCCCAUa---CGauuACCCuG- -5'
4051 3' -52.5 NC_001650.1 + 139106 0.66 0.989084
Target:  5'- ---aAGGUUGGGg--GUUAGUGGGGg -3'
miRNA:   3'- ccacUCCAGCCCauaCGAUUACCCUg -5'
4051 3' -52.5 NC_001650.1 + 7610 0.66 0.989084
Target:  5'- gGGUGAGGU-GGGUGgcccGCcauUGGG-Cg -3'
miRNA:   3'- -CCACUCCAgCCCAUa---CGauuACCCuG- -5'
4051 3' -52.5 NC_001650.1 + 6068 0.66 0.987628
Target:  5'- cGGUGGGGagguuguagUUGGGUggGCUgGGUGGcGCg -3'
miRNA:   3'- -CCACUCC---------AGCCCAuaCGA-UUACCcUG- -5'
4051 3' -52.5 NC_001650.1 + 172775 0.66 0.987628
Target:  5'- cGGUGGGGagguuguagUUGGGUggGCUgGGUGGcGCg -3'
miRNA:   3'- -CCACUCC---------AGCCCAuaCGA-UUACCcUG- -5'
4051 3' -52.5 NC_001650.1 + 27066 0.66 0.987319
Target:  5'- uGGUGcAGGagGGGgcccuggAGUGGGACa -3'
miRNA:   3'- -CCAC-UCCagCCCauacga-UUACCCUG- -5'
4051 3' -52.5 NC_001650.1 + 112438 0.66 0.986026
Target:  5'- uGG-GGGGUCauGGGUGgucaGGUGGGGCa -3'
miRNA:   3'- -CCaCUCCAG--CCCAUacgaUUACCCUG- -5'
4051 3' -52.5 NC_001650.1 + 36395 0.66 0.986026
Target:  5'- ---cGGGUgGGGUAguggGCUAG-GGGGCc -3'
miRNA:   3'- ccacUCCAgCCCAUa---CGAUUaCCCUG- -5'
4051 3' -52.5 NC_001650.1 + 13676 0.66 0.985515
Target:  5'- aGGUGAGGaUGGGgggcuuaccuacagGCUAggGGGGa -3'
miRNA:   3'- -CCACUCCaGCCCaua-----------CGAUuaCCCUg -5'
4051 3' -52.5 NC_001650.1 + 180383 0.66 0.985515
Target:  5'- aGGUGAGGaUGGGgggcuuaccuacagGCUAggGGGGa -3'
miRNA:   3'- -CCACUCCaGCCCaua-----------CGAUuaCCCUg -5'
4051 3' -52.5 NC_001650.1 + 44382 0.66 0.984269
Target:  5'- gGGUGAGGgggugaGGGgGUGagggGGUGaGGACa -3'
miRNA:   3'- -CCACUCCag----CCCaUACga--UUAC-CCUG- -5'
4051 3' -52.5 NC_001650.1 + 28941 0.66 0.984269
Target:  5'- cGGcUGAGGcaccuggCGGGUAacauccuccccUGCUGGgcguacGGGACg -3'
miRNA:   3'- -CC-ACUCCa------GCCCAU-----------ACGAUUa-----CCCUG- -5'
4051 3' -52.5 NC_001650.1 + 1569 0.67 0.98235
Target:  5'- --aGAGGcCaGGUGUaGCU-AUGGGGCg -3'
miRNA:   3'- ccaCUCCaGcCCAUA-CGAuUACCCUG- -5'
4051 3' -52.5 NC_001650.1 + 168276 0.67 0.98235
Target:  5'- --aGAGGcCaGGUGUaGCU-AUGGGGCg -3'
miRNA:   3'- ccaCUCCaGcCCAUA-CGAuUACCCUG- -5'
4051 3' -52.5 NC_001650.1 + 19317 0.67 0.98026
Target:  5'- cGGUGGGGccCGGGggGUGg-GGUGGcGGCg -3'
miRNA:   3'- -CCACUCCa-GCCCa-UACgaUUACC-CUG- -5'
4051 3' -52.5 NC_001650.1 + 91743 0.67 0.972883
Target:  5'- --aGAGGUauguggauUGGGUGgugGCU-GUGGGGCu -3'
miRNA:   3'- ccaCUCCA--------GCCCAUa--CGAuUACCCUG- -5'
4051 3' -52.5 NC_001650.1 + 62718 0.67 0.972883
Target:  5'- ----cGGU-GGGagAUGCUGGUGGGGCu -3'
miRNA:   3'- ccacuCCAgCCCa-UACGAUUACCCUG- -5'
4051 3' -52.5 NC_001650.1 + 73472 0.67 0.972883
Target:  5'- --gGGGGcuUCGGGggcgGCUGcUGGGGCu -3'
miRNA:   3'- ccaCUCC--AGCCCaua-CGAUuACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.