miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4057 3' -56.2 NC_001650.1 + 2340 0.66 0.920038
Target:  5'- --gCCACAUGGggauACCC--GCCCACuAUGg -3'
miRNA:   3'- cugGGUGUACC----UGGGaaCGGGUG-UAC- -5'
4057 3' -56.2 NC_001650.1 + 2404 0.67 0.882252
Target:  5'- cGGCCCAgcUGGcACCC-UGCCCGgGUc -3'
miRNA:   3'- -CUGGGUguACC-UGGGaACGGGUgUAc -5'
4057 3' -56.2 NC_001650.1 + 5970 0.68 0.823231
Target:  5'- -uCCCAU-UGGGCCUUUgggaaauuacccaagGCCCACAUGc -3'
miRNA:   3'- cuGGGUGuACCUGGGAA---------------CGGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 8371 0.68 0.828294
Target:  5'- -cCCCACAcucaGGACCCcUGCCCcuCAUa -3'
miRNA:   3'- cuGGGUGUa---CCUGGGaACGGGu-GUAc -5'
4057 3' -56.2 NC_001650.1 + 11210 0.71 0.687349
Target:  5'- uGGCCCAauagGGACCCagggggagUUGCCCACu-- -3'
miRNA:   3'- -CUGGGUgua-CCUGGG--------AACGGGUGuac -5'
4057 3' -56.2 NC_001650.1 + 11770 0.72 0.626393
Target:  5'- gGACCCcCAUGcacucaGACCCccgUGCCCACAa- -3'
miRNA:   3'- -CUGGGuGUAC------CUGGGa--ACGGGUGUac -5'
4057 3' -56.2 NC_001650.1 + 14173 1.09 0.00317
Target:  5'- gGACCCACAUGGACCCUUGCCCACAUGg -3'
miRNA:   3'- -CUGGGUGUACCUGGGAACGGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 14206 1.05 0.005215
Target:  5'- uGCCCACAUGGACCCUUGCCCACAUGg -3'
miRNA:   3'- cUGGGUGUACCUGGGAACGGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 14238 0.98 0.016156
Target:  5'- uGCCCACAUGGACCCcUGCCCACAUGg -3'
miRNA:   3'- cUGGGUGUACCUGGGaACGGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 14270 0.98 0.016156
Target:  5'- uGCCCACAUGGACCCcUGCCCACAUGg -3'
miRNA:   3'- cUGGGUGUACCUGGGaACGGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 14302 0.98 0.016156
Target:  5'- uGCCCACAUGGACCCcUGCCCACAUGg -3'
miRNA:   3'- cUGGGUGUACCUGGGaACGGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 14331 0.94 0.028729
Target:  5'- -cCCCACAUGGACCCUUGCCCACuUGg -3'
miRNA:   3'- cuGGGUGUACCUGGGAACGGGUGuAC- -5'
4057 3' -56.2 NC_001650.1 + 14398 0.87 0.082324
Target:  5'- --aCCACAUGGACCCUUGCCCACc-- -3'
miRNA:   3'- cugGGUGUACCUGGGAACGGGUGuac -5'
4057 3' -56.2 NC_001650.1 + 14455 0.78 0.311489
Target:  5'- cACCCcccuUGGACCCcUGCCCACGUGu -3'
miRNA:   3'- cUGGGugu-ACCUGGGaACGGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 19570 0.67 0.860339
Target:  5'- -uCCCACcgGGAgCCCgggUGCCgCGCGg- -3'
miRNA:   3'- cuGGGUGuaCCU-GGGa--ACGG-GUGUac -5'
4057 3' -56.2 NC_001650.1 + 22021 0.71 0.65696
Target:  5'- cGCCCGCGUGcccgucccGGCCCUgGCCCACc-- -3'
miRNA:   3'- cUGGGUGUAC--------CUGGGAaCGGGUGuac -5'
4057 3' -56.2 NC_001650.1 + 22494 0.69 0.793423
Target:  5'- cGCCCgGCAUGGGCCCcgccucgagGCcCCACAg- -3'
miRNA:   3'- cUGGG-UGUACCUGGGaa-------CG-GGUGUac -5'
4057 3' -56.2 NC_001650.1 + 24592 0.67 0.881552
Target:  5'- cAUCCAagggaauCAUGGGuccCCCUUGCCCACc-- -3'
miRNA:   3'- cUGGGU-------GUACCU---GGGAACGGGUGuac -5'
4057 3' -56.2 NC_001650.1 + 24597 0.67 0.860339
Target:  5'- -uCCCACcUGGACCUggcgcacgUGCUCACGg- -3'
miRNA:   3'- cuGGGUGuACCUGGGa-------ACGGGUGUac -5'
4057 3' -56.2 NC_001650.1 + 27755 0.69 0.791614
Target:  5'- cACCUACGUGGGCaCCgcggccaacacGCCCAUGUGc -3'
miRNA:   3'- cUGGGUGUACCUG-GGaa---------CGGGUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.