miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4057 3' -56.2 NC_001650.1 + 104452 0.67 0.875161
Target:  5'- aGAUCCACucccaggguagAUGGGCCCgcuuCCCACAg- -3'
miRNA:   3'- -CUGGGUG-----------UACCUGGGaac-GGGUGUac -5'
4057 3' -56.2 NC_001650.1 + 109476 0.67 0.875161
Target:  5'- uGGCCUggucuaugugcaGCGUGuaGGCCC-UGCCCAUGUGg -3'
miRNA:   3'- -CUGGG------------UGUAC--CUGGGaACGGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 136453 0.67 0.867855
Target:  5'- cGCCCACGcgcaGGCCCUcgcacaggGCCCGCAUc -3'
miRNA:   3'- cUGGGUGUac--CUGGGAa-------CGGGUGUAc -5'
4057 3' -56.2 NC_001650.1 + 100151 0.67 0.867855
Target:  5'- gGACaCCAUAaagGGGCCCcgGUCCACAa- -3'
miRNA:   3'- -CUG-GGUGUa--CCUGGGaaCGGGUGUac -5'
4057 3' -56.2 NC_001650.1 + 24597 0.67 0.860339
Target:  5'- -uCCCACcUGGACCUggcgcacgUGCUCACGg- -3'
miRNA:   3'- cuGGGUGuACCUGGGa-------ACGGGUGUac -5'
4057 3' -56.2 NC_001650.1 + 72570 0.67 0.860339
Target:  5'- gGACCCugAgGGACCUgcugcagGCCUcggACGUGg -3'
miRNA:   3'- -CUGGGugUaCCUGGGaa-----CGGG---UGUAC- -5'
4057 3' -56.2 NC_001650.1 + 83457 0.67 0.860339
Target:  5'- uGGCCCAgAgGGACCaccugcgcgUGuCCCACGUGu -3'
miRNA:   3'- -CUGGGUgUaCCUGGga-------AC-GGGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 111139 0.67 0.860339
Target:  5'- aGCCCGgGUGGAUCCUguucuugGCCUGguUGa -3'
miRNA:   3'- cUGGGUgUACCUGGGAa------CGGGUguAC- -5'
4057 3' -56.2 NC_001650.1 + 162805 0.67 0.860339
Target:  5'- uGACCC-CcgGGGCCg-UGCugCCACGUGg -3'
miRNA:   3'- -CUGGGuGuaCCUGGgaACG--GGUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 19570 0.67 0.860339
Target:  5'- -uCCCACcgGGAgCCCgggUGCCgCGCGg- -3'
miRNA:   3'- cuGGGUGuaCCU-GGGa--ACGG-GUGUac -5'
4057 3' -56.2 NC_001650.1 + 78638 0.67 0.852618
Target:  5'- aGCCCACGUGGugCU--GCCCgagGCGUu -3'
miRNA:   3'- cUGGGUGUACCugGGaaCGGG---UGUAc -5'
4057 3' -56.2 NC_001650.1 + 157394 0.68 0.839855
Target:  5'- aGGCCCGCGgccuucugcaggaacUGGuaGCCCUgccUGCCCugGUc -3'
miRNA:   3'- -CUGGGUGU---------------ACC--UGGGA---ACGGGugUAc -5'
4057 3' -56.2 NC_001650.1 + 79456 0.68 0.836589
Target:  5'- cGCCaacugcgggGCGUGGACCCUcuggcUGCCCugAUu -3'
miRNA:   3'- cUGGg--------UGUACCUGGGA-----ACGGGugUAc -5'
4057 3' -56.2 NC_001650.1 + 105699 0.68 0.836589
Target:  5'- uAUCCugGUGcGGCCCUacgUGCCUGCAg- -3'
miRNA:   3'- cUGGGugUAC-CUGGGA---ACGGGUGUac -5'
4057 3' -56.2 NC_001650.1 + 138665 0.68 0.836589
Target:  5'- uGCCaGCAUGGcCCCUgucUGCCaGCAUGg -3'
miRNA:   3'- cUGGgUGUACCuGGGA---ACGGgUGUAC- -5'
4057 3' -56.2 NC_001650.1 + 102629 0.68 0.828294
Target:  5'- cGACCuCGCGUcGGGcgacCCCgagGCCCugGUGg -3'
miRNA:   3'- -CUGG-GUGUA-CCU----GGGaa-CGGGugUAC- -5'
4057 3' -56.2 NC_001650.1 + 175078 0.68 0.828294
Target:  5'- -cCCCACAcucaGGACCCcUGCCCcuCAUa -3'
miRNA:   3'- cuGGGUGUa---CCUGGGaACGGGu-GUAc -5'
4057 3' -56.2 NC_001650.1 + 131218 0.68 0.828294
Target:  5'- aGGCCCucCGUGGACCCgguccccgaGaCCCugGUGc -3'
miRNA:   3'- -CUGGGu-GUACCUGGGaa-------C-GGGugUAC- -5'
4057 3' -56.2 NC_001650.1 + 8371 0.68 0.828294
Target:  5'- -cCCCACAcucaGGACCCcUGCCCcuCAUa -3'
miRNA:   3'- cuGGGUGUa---CCUGGGaACGGGu-GUAc -5'
4057 3' -56.2 NC_001650.1 + 5970 0.68 0.823231
Target:  5'- -uCCCAU-UGGGCCUUUgggaaauuacccaagGCCCACAUGc -3'
miRNA:   3'- cuGGGUGuACCUGGGAA---------------CGGGUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.