miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
406 5' -56.1 AC_000011.1 + 11541 0.66 0.549428
Target:  5'- aGCaUCGUgGuGCAGGAGCGCgGgcuGCCGc -3'
miRNA:   3'- -CG-AGUAgC-CGUUCUCGCGgCag-UGGU- -5'
406 5' -56.1 AC_000011.1 + 9956 0.66 0.538423
Target:  5'- -aUCcUCGcCGAGcGCGUCGUCGCCGa -3'
miRNA:   3'- cgAGuAGCcGUUCuCGCGGCAGUGGU- -5'
406 5' -56.1 AC_000011.1 + 9270 0.66 0.526408
Target:  5'- cCUCAggCGGCAgugguggcgggggAGGGgGCCugcGUCGCCGg -3'
miRNA:   3'- cGAGUa-GCCGU-------------UCUCgCGG---CAGUGGU- -5'
406 5' -56.1 AC_000011.1 + 3792 0.67 0.474244
Target:  5'- aCUCgaGUUGGCcaccAGAGUGCCGUaguaGCCGg -3'
miRNA:   3'- cGAG--UAGCCGu---UCUCGCGGCAg---UGGU- -5'
406 5' -56.1 AC_000011.1 + 15871 0.67 0.463913
Target:  5'- uGCUCAgggCGGCcAGAcGCGCgGcuucaggCGCCAg -3'
miRNA:   3'- -CGAGUa--GCCGuUCU-CGCGgCa------GUGGU- -5'
406 5' -56.1 AC_000011.1 + 20500 0.67 0.453701
Target:  5'- aCUCGUUGGgcguCAGGAGCcgGUCGUUGCCGg -3'
miRNA:   3'- cGAGUAGCC----GUUCUCG--CGGCAGUGGU- -5'
406 5' -56.1 AC_000011.1 + 17512 0.69 0.376747
Target:  5'- cGUUCAUgGGCAccuGGAGCGacauCGgCACCAg -3'
miRNA:   3'- -CGAGUAgCCGU---UCUCGCg---GCaGUGGU- -5'
406 5' -56.1 AC_000011.1 + 16446 0.7 0.325096
Target:  5'- uGCUUA-CGGCAAGcGCaGCCGUuccgCACCGa -3'
miRNA:   3'- -CGAGUaGCCGUUCuCG-CGGCA----GUGGU- -5'
406 5' -56.1 AC_000011.1 + 10990 0.7 0.325096
Target:  5'- gGCUgG-CGcGCcuGGGGGCGUCGUCGCCGg -3'
miRNA:   3'- -CGAgUaGC-CG--UUCUCGCGGCAGUGGU- -5'
406 5' -56.1 AC_000011.1 + 9449 0.7 0.325096
Target:  5'- cGCUg--CGGCcccgcgaggacGGGcGCGCCGUCACCGa -3'
miRNA:   3'- -CGAguaGCCG-----------UUCuCGCGGCAGUGGU- -5'
406 5' -56.1 AC_000011.1 + 23296 0.77 0.115109
Target:  5'- cGCgg--CGGCGAGAGC-CCGUCGCCu -3'
miRNA:   3'- -CGaguaGCCGUUCUCGcGGCAGUGGu -5'
406 5' -56.1 AC_000011.1 + 10174 0.78 0.091204
Target:  5'- cGCUCggUGGCGGGGGCGCCGggCGCgAg -3'
miRNA:   3'- -CGAGuaGCCGUUCUCGCGGCa-GUGgU- -5'
406 5' -56.1 AC_000011.1 + 20783 1.11 0.000335
Target:  5'- cGCUCAUCGGCAAGAGCGCCGUCACCAg -3'
miRNA:   3'- -CGAGUAGCCGUUCUCGCGGCAGUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.