Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
406 | 5' | -56.1 | AC_000011.1 | + | 9956 | 0.66 | 0.538423 |
Target: 5'- -aUCcUCGcCGAGcGCGUCGUCGCCGa -3' miRNA: 3'- cgAGuAGCcGUUCuCGCGGCAGUGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 3792 | 0.67 | 0.474244 |
Target: 5'- aCUCgaGUUGGCcaccAGAGUGCCGUaguaGCCGg -3' miRNA: 3'- cGAG--UAGCCGu---UCUCGCGGCAg---UGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 20500 | 0.67 | 0.453701 |
Target: 5'- aCUCGUUGGgcguCAGGAGCcgGUCGUUGCCGg -3' miRNA: 3'- cGAGUAGCC----GUUCUCG--CGGCAGUGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 9449 | 0.7 | 0.325096 |
Target: 5'- cGCUg--CGGCcccgcgaggacGGGcGCGCCGUCACCGa -3' miRNA: 3'- -CGAguaGCCG-----------UUCuCGCGGCAGUGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 23296 | 0.77 | 0.115109 |
Target: 5'- cGCgg--CGGCGAGAGC-CCGUCGCCu -3' miRNA: 3'- -CGaguaGCCGUUCUCGcGGCAGUGGu -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 11541 | 0.66 | 0.549428 |
Target: 5'- aGCaUCGUgGuGCAGGAGCGCgGgcuGCCGc -3' miRNA: 3'- -CG-AGUAgC-CGUUCUCGCGgCag-UGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 9270 | 0.66 | 0.526408 |
Target: 5'- cCUCAggCGGCAgugguggcgggggAGGGgGCCugcGUCGCCGg -3' miRNA: 3'- cGAGUa-GCCGU-------------UCUCgCGG---CAGUGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 15871 | 0.67 | 0.463913 |
Target: 5'- uGCUCAgggCGGCcAGAcGCGCgGcuucaggCGCCAg -3' miRNA: 3'- -CGAGUa--GCCGuUCU-CGCGgCa------GUGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 17512 | 0.69 | 0.376747 |
Target: 5'- cGUUCAUgGGCAccuGGAGCGacauCGgCACCAg -3' miRNA: 3'- -CGAGUAgCCGU---UCUCGCg---GCaGUGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 16446 | 0.7 | 0.325096 |
Target: 5'- uGCUUA-CGGCAAGcGCaGCCGUuccgCACCGa -3' miRNA: 3'- -CGAGUaGCCGUUCuCG-CGGCA----GUGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 10990 | 0.7 | 0.325096 |
Target: 5'- gGCUgG-CGcGCcuGGGGGCGUCGUCGCCGg -3' miRNA: 3'- -CGAgUaGC-CG--UUCUCGCGGCAGUGGU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 10174 | 0.78 | 0.091204 |
Target: 5'- cGCUCggUGGCGGGGGCGCCGggCGCgAg -3' miRNA: 3'- -CGAGuaGCCGUUCUCGCGGCa-GUGgU- -5' |
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406 | 5' | -56.1 | AC_000011.1 | + | 20783 | 1.11 | 0.000335 |
Target: 5'- cGCUCAUCGGCAAGAGCGCCGUCACCAg -3' miRNA: 3'- -CGAGUAGCCGUUCUCGCGGCAGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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