miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4062 5' -57.4 NC_001650.1 + 63732 0.66 0.890052
Target:  5'- aGGCCACCCucaggagguagaaGGCGGGccGGugCCUg -3'
miRNA:   3'- aCCGGUGGGuaa----------CUGUCU--CCugGGAg -5'
4062 5' -57.4 NC_001650.1 + 93560 0.66 0.889384
Target:  5'- gGGUCGCCCAc--GCAGAcGGACgCCa- -3'
miRNA:   3'- aCCGGUGGGUaacUGUCU-CCUG-GGag -5'
4062 5' -57.4 NC_001650.1 + 182980 0.66 0.889384
Target:  5'- gUGGcCCGCCCAUUGGgguUAGGGuccACCCa- -3'
miRNA:   3'- -ACC-GGUGGGUAACU---GUCUCc--UGGGag -5'
4062 5' -57.4 NC_001650.1 + 11024 0.66 0.889384
Target:  5'- cGGUC-CUUAcaggcgGACGGAGGAcCCCUCc -3'
miRNA:   3'- aCCGGuGGGUaa----CUGUCUCCU-GGGAG- -5'
4062 5' -57.4 NC_001650.1 + 102788 0.66 0.889384
Target:  5'- cGGCCuccccuCCCAgcaugagGaACAGGcGGGCCCUa -3'
miRNA:   3'- aCCGGu-----GGGUaa-----C-UGUCU-CCUGGGAg -5'
4062 5' -57.4 NC_001650.1 + 4045 0.66 0.889384
Target:  5'- cGGCCugCCA--GGCAuGGGGAaCCUg -3'
miRNA:   3'- aCCGGugGGUaaCUGU-CUCCUgGGAg -5'
4062 5' -57.4 NC_001650.1 + 68193 0.66 0.889384
Target:  5'- gUGGCCGCCUugaaccagGACAcguuGGAgcCCCUCu -3'
miRNA:   3'- -ACCGGUGGGuaa-----CUGUcu--CCU--GGGAG- -5'
4062 5' -57.4 NC_001650.1 + 170752 0.66 0.889384
Target:  5'- cGGCCugCCA--GGCAuGGGGAaCCUg -3'
miRNA:   3'- aCCGGugGGUaaCUGU-CUCCUgGGAg -5'
4062 5' -57.4 NC_001650.1 + 177731 0.66 0.889384
Target:  5'- cGGUC-CUUAcaggcgGACGGAGGAcCCCUCc -3'
miRNA:   3'- aCCGGuGGGUaa----CUGUCUCCU-GGGAG- -5'
4062 5' -57.4 NC_001650.1 + 16273 0.66 0.889384
Target:  5'- gUGGcCCGCCCAUUGGgguUAGGGuccACCCa- -3'
miRNA:   3'- -ACC-GGUGGGUAACU---GUCUCc--UGGGag -5'
4062 5' -57.4 NC_001650.1 + 47954 0.66 0.889384
Target:  5'- gGGUUGCCCGa-GACAGGcuGCCCUCu -3'
miRNA:   3'- aCCGGUGGGUaaCUGUCUccUGGGAG- -5'
4062 5' -57.4 NC_001650.1 + 147563 0.66 0.889384
Target:  5'- cGGCCACguCCAgcaGGCAGGagaaGACCCUg -3'
miRNA:   3'- aCCGGUG--GGUaa-CUGUCUc---CUGGGAg -5'
4062 5' -57.4 NC_001650.1 + 167640 0.66 0.882582
Target:  5'- gUGGUCAgCCAUguugGugGGuGGGCCUa- -3'
miRNA:   3'- -ACCGGUgGGUAa---CugUCuCCUGGGag -5'
4062 5' -57.4 NC_001650.1 + 70470 0.66 0.882582
Target:  5'- aGcGCCAUCCug-GACAgGAGGGCCauuuUCa -3'
miRNA:   3'- aC-CGGUGGGuaaCUGU-CUCCUGGg---AG- -5'
4062 5' -57.4 NC_001650.1 + 123015 0.66 0.88189
Target:  5'- aGGCaacccccccacauCGCCCGgu--CAGGGGcACCCUCu -3'
miRNA:   3'- aCCG-------------GUGGGUaacuGUCUCC-UGGGAG- -5'
4062 5' -57.4 NC_001650.1 + 20735 0.66 0.875563
Target:  5'- gGGUCAUCCAcuucUUGugGGucugggGGGAgCCCUCc -3'
miRNA:   3'- aCCGGUGGGU----AACugUC------UCCU-GGGAG- -5'
4062 5' -57.4 NC_001650.1 + 52191 0.66 0.875563
Target:  5'- cGGCCGCggCCAgcGcguagagcagguGCAGGGGGCUCUUg -3'
miRNA:   3'- aCCGGUG--GGUaaC------------UGUCUCCUGGGAG- -5'
4062 5' -57.4 NC_001650.1 + 52114 0.66 0.875563
Target:  5'- gGGCgGCCCGUaggGGUAGGGGGuccccggcucCCCUCc -3'
miRNA:   3'- aCCGgUGGGUAa--CUGUCUCCU----------GGGAG- -5'
4062 5' -57.4 NC_001650.1 + 171422 0.66 0.875563
Target:  5'- -uGCCAgCCAUggGGCuccGGAGG-CCCUCc -3'
miRNA:   3'- acCGGUgGGUAa-CUG---UCUCCuGGGAG- -5'
4062 5' -57.4 NC_001650.1 + 170705 0.66 0.875563
Target:  5'- gGaGCuCGCCCAcgGACAGAGucCCCa- -3'
miRNA:   3'- aC-CG-GUGGGUaaCUGUCUCcuGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.