miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4088 5' -52.8 NC_001655.1 + 1818 0.67 0.272931
Target:  5'- aCCAUGGCUAacaacCgCAugGCaCAACGGCu -3'
miRNA:   3'- cGGUAUCGGUga---G-GUugCG-GUUGUCG- -5'
4088 5' -52.8 NC_001655.1 + 8759 0.68 0.214129
Target:  5'- aGCCAgggcGGUC-CUcgCCAGCGCCAAgaGGCg -3'
miRNA:   3'- -CGGUa---UCGGuGA--GGUUGCGGUUg-UCG- -5'
4088 5' -52.8 NC_001655.1 + 3337 0.76 0.059762
Target:  5'- aGUCAUGaCCACUgCCAuCGCUGACAGCg -3'
miRNA:   3'- -CGGUAUcGGUGA-GGUuGCGGUUGUCG- -5'
4088 5' -52.8 NC_001655.1 + 5174 1.15 4.3e-05
Target:  5'- aGCCAUAGCCACUCCAACGCCAACAGCg -3'
miRNA:   3'- -CGGUAUCGGUGAGGUUGCGGUUGUCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.