Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
409 | 3' | -57.5 | AC_000011.1 | + | 11358 | 0.66 | 0.477617 |
Target: 5'- gGCCugauGCaCCUGUGGGaccugcuggaggcCAucgugcAGAACCCCACCa -3' miRNA: 3'- -UGG----CG-GGGUACCU-------------GU------UCUUGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 11898 | 0.66 | 0.447271 |
Target: 5'- aGCCGCCgggCCuUGGAgGcggcggcAGGACCCUACg -3' miRNA: 3'- -UGGCGG---GGuACCUgU-------UCUUGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 12475 | 0.66 | 0.478646 |
Target: 5'- -gUGCCCCG-GGGCcagGAGGACUaCACCa -3' miRNA: 3'- ugGCGGGGUaCCUG---UUCUUGGgGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 12859 | 0.67 | 0.400118 |
Target: 5'- aGCCGCgCCC-UGGGcCAGGAcgACCCgggcaACCu -3' miRNA: 3'- -UGGCG-GGGuACCU-GUUCU--UGGGg----UGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 14638 | 0.68 | 0.381804 |
Target: 5'- aGCCGCCUCAgcaaccugcUGGGCAuucgcaAGAggcaGCCCUuCCa -3' miRNA: 3'- -UGGCGGGGU---------ACCUGU------UCU----UGGGGuGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 15785 | 0.68 | 0.381804 |
Target: 5'- cAUCGCCCgGcGGcACcGGAGcacCCCCGCCa -3' miRNA: 3'- -UGGCGGGgUaCC-UGuUCUU---GGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 15982 | 0.7 | 0.256258 |
Target: 5'- uGCCGCCgCCGUGGccgcGCGucuccGggUCCUGCCg -3' miRNA: 3'- -UGGCGG-GGUACC----UGUu----CuuGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 16153 | 0.71 | 0.249652 |
Target: 5'- uACgGCCCUgcgGUGGugAAGGaggaaagaaaGCCCCGCa -3' miRNA: 3'- -UGgCGGGG---UACCugUUCU----------UGGGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 16568 | 0.74 | 0.141348 |
Target: 5'- cGCCGCgCCGgggguucaagcgcgaGGGCGAGGaucuguACCCCACCa -3' miRNA: 3'- -UGGCGgGGUa--------------CCUGUUCU------UGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 17301 | 0.68 | 0.385422 |
Target: 5'- cGCCGCCgCCgGUGGugGuGGcgacgcaucccguuCCCCGCCa -3' miRNA: 3'- -UGGCGG-GG-UACCugUuCUu-------------GGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 17836 | 0.78 | 0.076998 |
Target: 5'- uGCCuCCCC-UGGACAAGcggggcgagaagcGACCCCGCCc -3' miRNA: 3'- -UGGcGGGGuACCUGUUC-------------UUGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 17997 | 0.67 | 0.409482 |
Target: 5'- gGCCGCgUgGUGGGCA--GACCCaguuuCACCg -3' miRNA: 3'- -UGGCGgGgUACCUGUucUUGGG-----GUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 18036 | 0.67 | 0.409482 |
Target: 5'- cCCGCCCCucuacaGUGGcUAAGc-CCCUGCCg -3' miRNA: 3'- uGGCGGGG------UACCuGUUCuuGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 18313 | 0.67 | 0.409482 |
Target: 5'- uGCUGCCCCAgUGGGCGuacauGCacaUCGCCg -3' miRNA: 3'- -UGGCGGGGU-ACCUGUucu--UGg--GGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 18490 | 0.68 | 0.390891 |
Target: 5'- cGCUGCgcuucgugCCCGUGGACcgcGAGGACaaCACCu -3' miRNA: 3'- -UGGCG--------GGGUACCUG---UUCUUGggGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 19812 | 0.75 | 0.118963 |
Target: 5'- cGCUGgaUCCCAUGGACAAcguGAACCCCuucaACCa -3' miRNA: 3'- -UGGC--GGGGUACCUGUU---CUUGGGG----UGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 19871 | 0.69 | 0.338527 |
Target: 5'- uACCGCUCCAugcuccUGGGCAAcGGGCgCUACg -3' miRNA: 3'- -UGGCGGGGU------ACCUGUU-CUUGgGGUGg -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 20734 | 0.66 | 0.448265 |
Target: 5'- -gCGCCcaCCAUGcGcCAGGGccagcccuACCCCGCCa -3' miRNA: 3'- ugGCGG--GGUAC-CuGUUCU--------UGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 21530 | 1.12 | 0.000217 |
Target: 5'- gACCGCCCCAUGGACAAGAACCCCACCa -3' miRNA: 3'- -UGGCGGGGUACCUGUUCUUGGGGUGG- -5' |
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409 | 3' | -57.5 | AC_000011.1 | + | 21595 | 0.68 | 0.381804 |
Target: 5'- gUCGCCCCA-GGugGAa---CCCACCc -3' miRNA: 3'- uGGCGGGGUaCCugUUcuugGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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