miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
409 5' -59.9 AC_000011.1 + 18147 0.66 0.323136
Target:  5'- -gGGCGGGcGGUGCCCccgggucGCGcGCggGCc -3'
miRNA:   3'- gaCUGCCC-CCACGGGu------UGC-CGuaCGa -5'
409 5' -59.9 AC_000011.1 + 23292 0.66 0.323136
Target:  5'- -cGuuCGGGGGUGCgcucCCGGCGGC--GCUc -3'
miRNA:   3'- gaCu-GCCCCCACG----GGUUGCCGuaCGA- -5'
409 5' -59.9 AC_000011.1 + 9870 0.67 0.299943
Target:  5'- -cGAgGaGGaGGUGCCCGuggaGCGGCucAUGCa -3'
miRNA:   3'- gaCUgC-CC-CCACGGGU----UGCCG--UACGa -5'
409 5' -59.9 AC_000011.1 + 10180 0.67 0.278059
Target:  5'- gUGGCGGGGGcGCCgGGCGcgagguccucgaGCAUGgUg -3'
miRNA:   3'- gACUGCCCCCaCGGgUUGC------------CGUACgA- -5'
409 5' -59.9 AC_000011.1 + 9285 0.67 0.278059
Target:  5'- gUGGCGGGGGaggggGCCUgcgucgccGGCGGCGcacggGCa -3'
miRNA:   3'- gACUGCCCCCa----CGGG--------UUGCCGUa----CGa -5'
409 5' -59.9 AC_000011.1 + 11210 0.68 0.257466
Target:  5'- gCUGACGGGGaucaGCCCcGCGcGCGcGCa -3'
miRNA:   3'- -GACUGCCCCca--CGGGuUGC-CGUaCGa -5'
409 5' -59.9 AC_000011.1 + 14458 0.69 0.23197
Target:  5'- uUGGCGGuGGGgcgGCagAACGGgGUGCUg -3'
miRNA:   3'- gACUGCC-CCCa--CGggUUGCCgUACGA- -5'
409 5' -59.9 AC_000011.1 + 8424 0.69 0.206968
Target:  5'- -cGACGGGGGcggUGCCUcuuccaugguuagaAGCGGCG-GCg -3'
miRNA:   3'- gaCUGCCCCC---ACGGG--------------UUGCCGUaCGa -5'
409 5' -59.9 AC_000011.1 + 16562 0.69 0.213701
Target:  5'- gCUGGCGuGGGGUugccgugGUCCAGCGGgAUGg- -3'
miRNA:   3'- -GACUGC-CCCCA-------CGGGUUGCCgUACga -5'
409 5' -59.9 AC_000011.1 + 3190 0.7 0.197744
Target:  5'- cCUGACGGGGGUGUuuGACaugaauguggaGGUGUGg- -3'
miRNA:   3'- -GACUGCCCCCACGggUUG-----------CCGUACga -5'
409 5' -59.9 AC_000011.1 + 6554 0.7 0.172668
Target:  5'- aCUGA-GGGGcGUGCCCcAgGGCAUGg- -3'
miRNA:   3'- -GACUgCCCC-CACGGGuUgCCGUACga -5'
409 5' -59.9 AC_000011.1 + 15852 0.73 0.107119
Target:  5'- aUGGCGGGGGUGCuCCggUgccgccgGGCgAUGCg -3'
miRNA:   3'- gACUGCCCCCACG-GGuuG-------CCG-UACGa -5'
409 5' -59.9 AC_000011.1 + 21565 1.07 0.000285
Target:  5'- gCUGACGGGGGUGCCCAACGGCAUGCUc -3'
miRNA:   3'- -GACUGCCCCCACGGGUUGCCGUACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.