Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
409 | 5' | -59.9 | AC_000011.1 | + | 18147 | 0.66 | 0.323136 |
Target: 5'- -gGGCGGGcGGUGCCCccgggucGCGcGCggGCc -3' miRNA: 3'- gaCUGCCC-CCACGGGu------UGC-CGuaCGa -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 23292 | 0.66 | 0.323136 |
Target: 5'- -cGuuCGGGGGUGCgcucCCGGCGGC--GCUc -3' miRNA: 3'- gaCu-GCCCCCACG----GGUUGCCGuaCGA- -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 9870 | 0.67 | 0.299943 |
Target: 5'- -cGAgGaGGaGGUGCCCGuggaGCGGCucAUGCa -3' miRNA: 3'- gaCUgC-CC-CCACGGGU----UGCCG--UACGa -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 10180 | 0.67 | 0.278059 |
Target: 5'- gUGGCGGGGGcGCCgGGCGcgagguccucgaGCAUGgUg -3' miRNA: 3'- gACUGCCCCCaCGGgUUGC------------CGUACgA- -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 9285 | 0.67 | 0.278059 |
Target: 5'- gUGGCGGGGGaggggGCCUgcgucgccGGCGGCGcacggGCa -3' miRNA: 3'- gACUGCCCCCa----CGGG--------UUGCCGUa----CGa -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 11210 | 0.68 | 0.257466 |
Target: 5'- gCUGACGGGGaucaGCCCcGCGcGCGcGCa -3' miRNA: 3'- -GACUGCCCCca--CGGGuUGC-CGUaCGa -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 14458 | 0.69 | 0.23197 |
Target: 5'- uUGGCGGuGGGgcgGCagAACGGgGUGCUg -3' miRNA: 3'- gACUGCC-CCCa--CGggUUGCCgUACGA- -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 8424 | 0.69 | 0.206968 |
Target: 5'- -cGACGGGGGcggUGCCUcuuccaugguuagaAGCGGCG-GCg -3' miRNA: 3'- gaCUGCCCCC---ACGGG--------------UUGCCGUaCGa -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 16562 | 0.69 | 0.213701 |
Target: 5'- gCUGGCGuGGGGUugccgugGUCCAGCGGgAUGg- -3' miRNA: 3'- -GACUGC-CCCCA-------CGGGUUGCCgUACga -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 3190 | 0.7 | 0.197744 |
Target: 5'- cCUGACGGGGGUGUuuGACaugaauguggaGGUGUGg- -3' miRNA: 3'- -GACUGCCCCCACGggUUG-----------CCGUACga -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 6554 | 0.7 | 0.172668 |
Target: 5'- aCUGA-GGGGcGUGCCCcAgGGCAUGg- -3' miRNA: 3'- -GACUgCCCC-CACGGGuUgCCGUACga -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 15852 | 0.73 | 0.107119 |
Target: 5'- aUGGCGGGGGUGCuCCggUgccgccgGGCgAUGCg -3' miRNA: 3'- gACUGCCCCCACG-GGuuG-------CCG-UACGa -5' |
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409 | 5' | -59.9 | AC_000011.1 | + | 21565 | 1.07 | 0.000285 |
Target: 5'- gCUGACGGGGGUGCCCAACGGCAUGCUc -3' miRNA: 3'- -GACUGCCCCCACGGGUUGCCGUACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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