miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
410 3' -56.5 AC_000011.1 + 30347 0.66 0.550009
Target:  5'- cUAGCAgUGGGACugCuagauGGGGCCc- -3'
miRNA:   3'- -GUCGUgACCUUGugGuag--UCCCGGcc -5'
410 3' -56.5 AC_000011.1 + 12546 0.66 0.550009
Target:  5'- gAGCGa-GGugUACCAgUCcGGGCCGGa -3'
miRNA:   3'- gUCGUgaCCuuGUGGU-AGuCCCGGCC- -5'
410 3' -56.5 AC_000011.1 + 21219 0.66 0.550009
Target:  5'- uGGCcccgcacaaGCUGGccuGCGCCAUCGucaacacGGCCGGc -3'
miRNA:   3'- gUCG---------UGACCu--UGUGGUAGUc------CCGGCC- -5'
410 3' -56.5 AC_000011.1 + 7237 0.66 0.546713
Target:  5'- cCAGaGCUGGAAguCCGUgcgcuucuuguaggCGGGGuuGGg -3'
miRNA:   3'- -GUCgUGACCUUguGGUA--------------GUCCCggCC- -5'
410 3' -56.5 AC_000011.1 + 13286 0.67 0.485509
Target:  5'- --cCACaGGAAC-CCGUCauuGGGGUCGGg -3'
miRNA:   3'- gucGUGaCCUUGuGGUAG---UCCCGGCC- -5'
410 3' -56.5 AC_000011.1 + 34361 0.67 0.475099
Target:  5'- uCAGCACUcucaacuccucgGGggUcaaaACCAUauccCAGGGCaCGGg -3'
miRNA:   3'- -GUCGUGA------------CCuuG----UGGUA----GUCCCG-GCC- -5'
410 3' -56.5 AC_000011.1 + 13418 0.67 0.454623
Target:  5'- gGGCACcgccgcGGcAGCACCcUCGcGGCCGGa -3'
miRNA:   3'- gUCGUGa-----CC-UUGUGGuAGUcCCGGCC- -5'
410 3' -56.5 AC_000011.1 + 18127 0.68 0.424833
Target:  5'- gAGCACUcuGAACAgCAUCGuGGGuCUGGg -3'
miRNA:   3'- gUCGUGAc-CUUGUgGUAGU-CCC-GGCC- -5'
410 3' -56.5 AC_000011.1 + 26521 0.68 0.424833
Target:  5'- gCGGCACcGGcggccaGGC-CCAUCuGGGGCUGGu -3'
miRNA:   3'- -GUCGUGaCC------UUGuGGUAG-UCCCGGCC- -5'
410 3' -56.5 AC_000011.1 + 9699 0.68 0.396239
Target:  5'- uGGCGa-GGAGCACCAggUCuuuGGGcCCGGc -3'
miRNA:   3'- gUCGUgaCCUUGUGGU--AGu--CCC-GGCC- -5'
410 3' -56.5 AC_000011.1 + 4775 0.69 0.368915
Target:  5'- gAGCAgCUGGGACuugccgcaGCCggUGGGGCCGu -3'
miRNA:   3'- gUCGU-GACCUUG--------UGGuaGUCCCGGCc -5'
410 3' -56.5 AC_000011.1 + 17626 0.69 0.368915
Target:  5'- gCAGCAaggcgUGGAacaGCACCA-CAGGGCaGGc -3'
miRNA:   3'- -GUCGUg----ACCU---UGUGGUaGUCCCGgCC- -5'
410 3' -56.5 AC_000011.1 + 12585 0.69 0.368915
Target:  5'- -cGCuCUGGGgcaccucgGCACCAUCAGGcGCaGGg -3'
miRNA:   3'- guCGuGACCU--------UGUGGUAGUCC-CGgCC- -5'
410 3' -56.5 AC_000011.1 + 1359 0.69 0.368027
Target:  5'- gCAGCugUGGAAUguuuggaugacuuGCUA-CAGGGUgGGg -3'
miRNA:   3'- -GUCGugACCUUG-------------UGGUaGUCCCGgCC- -5'
410 3' -56.5 AC_000011.1 + 22215 0.69 0.360098
Target:  5'- gCAGUGCagggGGAucaGCAUCAUCuGGGCCuGGu -3'
miRNA:   3'- -GUCGUGa---CCU---UGUGGUAGuCCCGG-CC- -5'
410 3' -56.5 AC_000011.1 + 28316 0.69 0.360098
Target:  5'- uCAGCACcgGGGACagagacgguguACCAcUCGGGGuccCCGGg -3'
miRNA:   3'- -GUCGUGa-CCUUG-----------UGGU-AGUCCC---GGCC- -5'
410 3' -56.5 AC_000011.1 + 25734 0.7 0.30257
Target:  5'- gCAGCAC-GG-AUACCAUCuccgcuccGGGUCGGg -3'
miRNA:   3'- -GUCGUGaCCuUGUGGUAGu-------CCCGGCC- -5'
410 3' -56.5 AC_000011.1 + 16675 0.71 0.280171
Target:  5'- uGGCGCUuGGGCACCAUCAGcugcauGGUgGGg -3'
miRNA:   3'- gUCGUGAcCUUGUGGUAGUC------CCGgCC- -5'
410 3' -56.5 AC_000011.1 + 36445 0.71 0.278006
Target:  5'- gGGCGCUGauuggcugagagacGGGCgACCGUUAGGGgCGGg -3'
miRNA:   3'- gUCGUGAC--------------CUUG-UGGUAGUCCCgGCC- -5'
410 3' -56.5 AC_000011.1 + 15585 0.72 0.226904
Target:  5'- gGGCACuuccgcgcucccUGGGGCGCCcUCaAGGGCCGc -3'
miRNA:   3'- gUCGUG------------ACCUUGUGGuAG-UCCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.