miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
410 5' -57.8 AC_000011.1 + 13331 0.66 0.481118
Target:  5'- aCGCCcguccucGGCGCUGUccggcCGCGagGGUGcUGCc -3'
miRNA:   3'- -GCGG-------UCGUGGCA-----GCGCagCCACuACG- -5'
410 5' -57.8 AC_000011.1 + 5292 0.66 0.471954
Target:  5'- cCGaUCGGCGCCcugCGCGUCGGccaGGUaGCa -3'
miRNA:   3'- -GC-GGUCGUGGca-GCGCAGCCa--CUA-CG- -5'
410 5' -57.8 AC_000011.1 + 10197 0.66 0.451914
Target:  5'- cCGCCAGcCGCCGcCGCacuuccucaUCGGcuaccaguaccUGGUGCg -3'
miRNA:   3'- -GCGGUC-GUGGCaGCGc--------AGCC-----------ACUACG- -5'
410 5' -57.8 AC_000011.1 + 16402 0.67 0.44207
Target:  5'- uGCCGGagcgcuCGCCGg-GCGUgaagaccaCGGUGGUGCc -3'
miRNA:   3'- gCGGUC------GUGGCagCGCA--------GCCACUACG- -5'
410 5' -57.8 AC_000011.1 + 12738 0.67 0.422752
Target:  5'- gCGUCAGCaggcucgacACCGUCGCG-CGGUccccgaccGggGCc -3'
miRNA:   3'- -GCGGUCG---------UGGCAGCGCaGCCA--------CuaCG- -5'
410 5' -57.8 AC_000011.1 + 8523 0.68 0.385686
Target:  5'- aCGUCGGCGCCG-CGCG-CGGguagguucUGGuacUGCg -3'
miRNA:   3'- -GCGGUCGUGGCaGCGCaGCC--------ACU---ACG- -5'
410 5' -57.8 AC_000011.1 + 24042 0.68 0.367104
Target:  5'- gCGCCGGgACCcagGUUgaaaaggGCGUCGGcgcgGGUGCg -3'
miRNA:   3'- -GCGGUCgUGG---CAG-------CGCAGCCa---CUACG- -5'
410 5' -57.8 AC_000011.1 + 15868 0.68 0.359331
Target:  5'- gGCUcGCGCCG-CGCGcauggCGGgGGUGCu -3'
miRNA:   3'- gCGGuCGUGGCaGCGCa----GCCaCUACG- -5'
410 5' -57.8 AC_000011.1 + 9353 0.69 0.342474
Target:  5'- uCGCC-GCGCCGgcgUCGCauggucUCGGUGAcgGCg -3'
miRNA:   3'- -GCGGuCGUGGC---AGCGc-----AGCCACUa-CG- -5'
410 5' -57.8 AC_000011.1 + 24855 0.69 0.342474
Target:  5'- gGCCAGguCCGagGC---GGUGGUGCg -3'
miRNA:   3'- gCGGUCguGGCagCGcagCCACUACG- -5'
410 5' -57.8 AC_000011.1 + 15901 0.69 0.329404
Target:  5'- gCGCCAGCGCCGgcaggacccggagaCGCG-CGGccacgGcgGCg -3'
miRNA:   3'- -GCGGUCGUGGCa-------------GCGCaGCCa----CuaCG- -5'
410 5' -57.8 AC_000011.1 + 15711 0.7 0.278712
Target:  5'- gCGUCGGcCACCaccuggucgaucacGUCGuCGaCGGUGGUGCg -3'
miRNA:   3'- -GCGGUC-GUGG--------------CAGC-GCaGCCACUACG- -5'
410 5' -57.8 AC_000011.1 + 11551 0.7 0.27379
Target:  5'- aGCCAGCgGCCcUCGgGcUCGGUGAUauucaGCa -3'
miRNA:   3'- gCGGUCG-UGGcAGCgC-AGCCACUA-----CG- -5'
410 5' -57.8 AC_000011.1 + 3690 0.73 0.189456
Target:  5'- cCGCCAGCGCCGUgCGCGgaaUGGccaUGG-GCg -3'
miRNA:   3'- -GCGGUCGUGGCA-GCGCa--GCC---ACUaCG- -5'
410 5' -57.8 AC_000011.1 + 2325 0.73 0.169941
Target:  5'- uCGaCUGGCACagauGagGUGUCGGUGAUGCa -3'
miRNA:   3'- -GC-GGUCGUGg---CagCGCAGCCACUACG- -5'
410 5' -57.8 AC_000011.1 + 22088 1.11 0.000266
Target:  5'- uCGCCAGCACCGUCGCGUCGGUGAUGCu -3'
miRNA:   3'- -GCGGUCGUGGCAGCGCAGCCACUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.