miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
411 5' -55.7 AC_000011.1 + 22070 0.66 0.535877
Target:  5'- -----gGGCCGGgUGCuuCACGCUcGCc -3'
miRNA:   3'- caacaaCCGGUCgACGugGUGCGA-CG- -5'
411 5' -55.7 AC_000011.1 + 3857 0.66 0.532538
Target:  5'- ----gUGGCuCAGCUGCaggagcagacgcggGCCGCgGUUGCc -3'
miRNA:   3'- caacaACCG-GUCGACG--------------UGGUG-CGACG- -5'
411 5' -55.7 AC_000011.1 + 23834 0.66 0.502857
Target:  5'- --cGUaGGCgCGGCUGagcuccuCCACGCUGa -3'
miRNA:   3'- caaCAaCCG-GUCGACgu-----GGUGCGACg -5'
411 5' -55.7 AC_000011.1 + 24595 0.67 0.481343
Target:  5'- --gGUUGGUCAGCU---CCACGUUGg -3'
miRNA:   3'- caaCAACCGGUCGAcguGGUGCGACg -5'
411 5' -55.7 AC_000011.1 + 12370 0.67 0.470755
Target:  5'- uGUUGUagcgGGCCAcGCgcuccaGCAgCGCGUUGUa -3'
miRNA:   3'- -CAACAa---CCGGU-CGa-----CGUgGUGCGACG- -5'
411 5' -55.7 AC_000011.1 + 11499 0.67 0.470755
Target:  5'- --cGUUGuCCcgacuauGCUGCACCACcaggaacaGCUGCg -3'
miRNA:   3'- caaCAACcGGu------CGACGUGGUG--------CGACG- -5'
411 5' -55.7 AC_000011.1 + 27159 0.67 0.470755
Target:  5'- -----aGGUCAGCUGCGCCACcaUGg -3'
miRNA:   3'- caacaaCCGGUCGACGUGGUGcgACg -5'
411 5' -55.7 AC_000011.1 + 14211 0.67 0.449943
Target:  5'- --gGgcGGCCAGCUGaaaACCAUcaUGCa -3'
miRNA:   3'- caaCaaCCGGUCGACg--UGGUGcgACG- -5'
411 5' -55.7 AC_000011.1 + 15027 0.67 0.449943
Target:  5'- aGUUGUaGGCUAG--GUACCA-GCUGCg -3'
miRNA:   3'- -CAACAaCCGGUCgaCGUGGUgCGACG- -5'
411 5' -55.7 AC_000011.1 + 9821 0.67 0.439728
Target:  5'- ----cUGGCCAGgUGUcaggACCACGCcugggGCa -3'
miRNA:   3'- caacaACCGGUCgACG----UGGUGCGa----CG- -5'
411 5' -55.7 AC_000011.1 + 18712 0.68 0.390728
Target:  5'- cUUGggGGCCAGaCUGUugUagGCGgUGCc -3'
miRNA:   3'- cAACaaCCGGUC-GACGugG--UGCgACG- -5'
411 5' -55.7 AC_000011.1 + 15885 0.68 0.390728
Target:  5'- ----cUGGCCcugcgcagcaaGGCUcGCGCCGCGCgcaugGCg -3'
miRNA:   3'- caacaACCGG-----------UCGA-CGUGGUGCGa----CG- -5'
411 5' -55.7 AC_000011.1 + 26728 0.69 0.36309
Target:  5'- -gUGUccagcUGGCgGGCgGCGCCACcCUGUg -3'
miRNA:   3'- caACA-----ACCGgUCGaCGUGGUGcGACG- -5'
411 5' -55.7 AC_000011.1 + 16886 0.69 0.362192
Target:  5'- -----cGGCCAGcCUGCugauGCCcaacuacGCGCUGCa -3'
miRNA:   3'- caacaaCCGGUC-GACG----UGG-------UGCGACG- -5'
411 5' -55.7 AC_000011.1 + 12284 0.69 0.354184
Target:  5'- -----aGGCCGGCcuggUGUACaaCGCGCUGCu -3'
miRNA:   3'- caacaaCCGGUCG----ACGUG--GUGCGACG- -5'
411 5' -55.7 AC_000011.1 + 24383 0.69 0.336838
Target:  5'- -----gGGCCAGCUGCuCguCGCUGa -3'
miRNA:   3'- caacaaCCGGUCGACGuGguGCGACg -5'
411 5' -55.7 AC_000011.1 + 11292 0.7 0.320119
Target:  5'- --gGUUGGCCgcGGCcacgUGCGCgCGCGCgggGCu -3'
miRNA:   3'- caaCAACCGG--UCG----ACGUG-GUGCGa--CG- -5'
411 5' -55.7 AC_000011.1 + 21385 0.7 0.320119
Target:  5'- --cGagGGCCuGCUGCGCCGCaGC-GCc -3'
miRNA:   3'- caaCaaCCGGuCGACGUGGUG-CGaCG- -5'
411 5' -55.7 AC_000011.1 + 34603 0.7 0.320119
Target:  5'- -----cGGCCGGCccccuUACCACGCUGUg -3'
miRNA:   3'- caacaaCCGGUCGac---GUGGUGCGACG- -5'
411 5' -55.7 AC_000011.1 + 16599 0.7 0.311996
Target:  5'- -----cGGUCGGCaGCACC-UGCUGCa -3'
miRNA:   3'- caacaaCCGGUCGaCGUGGuGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.