miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
413 3' -59.6 AC_000011.1 + 23215 0.66 0.346891
Target:  5'- gUCUCUUcgggggcagAGGCgGAGGCGAcGGGCu- -3'
miRNA:   3'- aAGAGGG---------UCCGgCUCUGCUaCCCGuc -5'
413 3' -59.6 AC_000011.1 + 25764 0.67 0.314322
Target:  5'- uUUCUCCCccGCCGAggacGACGGUcuGGCGGc -3'
miRNA:   3'- -AAGAGGGucCGGCU----CUGCUAc-CCGUC- -5'
413 3' -59.6 AC_000011.1 + 16780 0.67 0.30655
Target:  5'- gUCUgcacgCCCAGGcCCGGGGCcaccugcuuGAUGGGCc- -3'
miRNA:   3'- aAGA-----GGGUCC-GGCUCUG---------CUACCCGuc -5'
413 3' -59.6 AC_000011.1 + 4668 0.69 0.218711
Target:  5'- aUCUCCCAGGCUuuGAGcuCGGaGGGgGGg -3'
miRNA:   3'- aAGAGGGUCCGG--CUCu-GCUaCCCgUC- -5'
413 3' -59.6 AC_000011.1 + 8403 0.7 0.180947
Target:  5'- uUUCUUCUugggcGGCUGGGGCGAcggGGGCGGu -3'
miRNA:   3'- -AAGAGGGu----CCGGCUCUGCUa--CCCGUC- -5'
413 3' -59.6 AC_000011.1 + 21306 0.71 0.144961
Target:  5'- gUCUCgCGgccGGCCGuguuGACGAUGGcGCAGg -3'
miRNA:   3'- aAGAGgGU---CCGGCu---CUGCUACC-CGUC- -5'
413 3' -59.6 AC_000011.1 + 9431 0.72 0.122046
Target:  5'- aUCUCCagguGGCCGGGGgGGuccccguUGGGCAGg -3'
miRNA:   3'- aAGAGGgu--CCGGCUCUgCU-------ACCCGUC- -5'
413 3' -59.6 AC_000011.1 + 24858 0.73 0.118963
Target:  5'- gUCggCCAGGuCCGAGGCGGUGGuGCGc -3'
miRNA:   3'- aAGagGGUCC-GGCUCUGCUACC-CGUc -5'
413 3' -59.6 AC_000011.1 + 22857 1.06 0.000285
Target:  5'- cUUCUCCCAGGCCGAGACGAUGGGCAGg -3'
miRNA:   3'- -AAGAGGGUCCGGCUCUGCUACCCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.