Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 23215 | 0.66 | 0.346891 |
|
Target: 5'- gUCUCUUcgggggcagAGGCgGAGGCGAcGGGCu- -3' miRNA: 3'- aAGAGGG---------UCCGgCUCUGCUaCCCGuc -5' |
|||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 25764 | 0.67 | 0.314322 |
|
Target: 5'- uUUCUCCCccGCCGAggacGACGGUcuGGCGGc -3' miRNA: 3'- -AAGAGGGucCGGCU----CUGCUAc-CCGUC- -5' |
|||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 16780 | 0.67 | 0.30655 |
|
Target: 5'- gUCUgcacgCCCAGGcCCGGGGCcaccugcuuGAUGGGCc- -3' miRNA: 3'- aAGA-----GGGUCC-GGCUCUG---------CUACCCGuc -5' |
|||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 4668 | 0.69 | 0.218711 |
|
Target: 5'- aUCUCCCAGGCUuuGAGcuCGGaGGGgGGg -3' miRNA: 3'- aAGAGGGUCCGG--CUCu-GCUaCCCgUC- -5' |
|||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 8403 | 0.7 | 0.180947 |
|
Target: 5'- uUUCUUCUugggcGGCUGGGGCGAcggGGGCGGu -3' miRNA: 3'- -AAGAGGGu----CCGGCUCUGCUa--CCCGUC- -5' |
|||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 21306 | 0.71 | 0.144961 |
|
Target: 5'- gUCUCgCGgccGGCCGuguuGACGAUGGcGCAGg -3' miRNA: 3'- aAGAGgGU---CCGGCu---CUGCUACC-CGUC- -5' |
|||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 9431 | 0.72 | 0.122046 |
|
Target: 5'- aUCUCCagguGGCCGGGGgGGuccccguUGGGCAGg -3' miRNA: 3'- aAGAGGgu--CCGGCUCUgCU-------ACCCGUC- -5' |
|||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 24858 | 0.73 | 0.118963 |
|
Target: 5'- gUCggCCAGGuCCGAGGCGGUGGuGCGc -3' miRNA: 3'- aAGagGGUCC-GGCUCUGCUACC-CGUc -5' |
|||||||
| 413 | 3' | -59.6 | AC_000011.1 | + | 22857 | 1.06 | 0.000285 |
|
Target: 5'- cUUCUCCCAGGCCGAGACGAUGGGCAGg -3' miRNA: 3'- -AAGAGGGUCCGGCUCUGCUACCCGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home